SMTL ID : 3mxu.2 (1 other biounit)

Crystal structure of glycine cleavage system protein H from Bartonella henselae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 10 residues within 4Å: Chain A: H.31, T.46, D.47, Y.48, E.113, L.141 Chain B: K.70, R.131, L.132, E.135 15 PLIP interactions: 9 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:L.132, A:L.141 Hydrogen bonds: B:K.70, B:E.135, A:T.46, A:D.47, A:Y.48 Water bridges: B:R.131, B:R.131, A:H.31 Salt bridges: B:K.70, B:K.70, B:K.70, B:R.131, A:H.31 CIT.5: 10 residues within 4Å: Chain B: H.31, T.46, D.47, Y.48, E.113, L.141 Chain C: K.70, R.131, L.132, E.135 15 PLIP interactions: 6 interactions with chain B, 9 interactions with chain C Hydrophobic interactions: B:L.141, C:L.132 Hydrogen bonds: B:T.46, B:D.47, B:Y.48, C:K.70, C:E.135 Water bridges: B:H.31, C:R.131, C:R.131 Salt bridges: B:H.31, C:K.70, C:K.70, C:K.70, C:R.131 CIT.9: 10 residues within 4Å: Chain A: K.70, R.131, L.132, E.135 Chain C: H.31, T.46, D.47, Y.48, E.113, L.141 15 PLIP interactions: 6 interactions with chain C, 9 interactions with chain A Hydrophobic interactions: C:L.141, A:L.132 Hydrogen bonds: C:T.46, C:D.47, C:Y.48, A:K.70, A:E.135 Water bridges: C:H.31, A:R.131, A:R.131 Salt bridges: C:H.31, A:K.70, A:K.70, A:K.70, A:R.131

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: Q.29, K.139 Chain B: Q.29, K.139 Chain C: Q.29, K.139 Ligands: SO4.6, SO4.10 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: B:Q.29, A:Q.29, C:Q.29 Salt bridges: B:K.139, A:K.139, C:K.139 SO4.3: 3 residues within 4Å: Chain A: K.70, Q.128, R.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.128 Water bridges: A:K.70, A:R.131 Salt bridges: A:R.131 SO4.6: 8 residues within 4Å: Chain A: Q.29, K.139 Chain B: Q.29, K.139 Chain C: Q.29, K.139 Ligands: SO4.2, SO4.10 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: B:Q.29, A:Q.29, C:Q.29 Salt bridges: B:K.139, A:K.139, C:K.139 SO4.7: 3 residues within 4Å: Chain B: K.70, Q.128, R.131 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.128 Water bridges: B:K.70, B:R.131 Salt bridges: B:R.131 SO4.10: 8 residues within 4Å: Chain A: Q.29, K.139 Chain B: Q.29, K.139 Chain C: Q.29, K.139 Ligands: SO4.2, SO4.6 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: B:Q.29, A:Q.29, C:Q.29 Salt bridges: B:K.139, A:K.139, C:K.139 SO4.11: 3 residues within 4Å: Chain C: K.70, Q.128, R.131 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.128 Water bridges: C:K.70, C:R.131 Salt bridges: C:R.131

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: D.60, L.61, P.62, A.74, A.75, V.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.61 Water bridges: A:Q.63 EDO.8: 6 residues within 4Å: Chain B: D.60, L.61, P.62, A.74, A.75, V.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.61 Water bridges: B:Q.63 EDO.12: 6 residues within 4Å: Chain C: D.60, L.61, P.62, A.74, A.75, V.76 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:L.61 Water bridges: C:Q.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of glycine cleavage system protein H from Bartonella henselae. To be Published

Release Date

2010-05-26

Peptides

Glycine cleavage system H protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Glycine cleavage system H protein

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