SMTL ID : 3n1e.1 (3 other biounits)

Vps54 C-terminal domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.96, S.97, V.101, I.102, N.103, W.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.96, A:N.103 GOL.2: 4 residues within 4Å: Chain A: K.93, K.94, S.97, E.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.93, A:S.97, A:E.141 Water bridges: A:K.94 GOL.3: 4 residues within 4Å: Chain A: T.113, V.116, M.136, W.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.113 Water bridges: A:T.113, A:T.113, A:M.136

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: P.107, Q.108 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perez-Victoria, F.J. et al., Structural basis for the wobbler mouse neurodegenerative disorder caused by mutation in the Vps54 subunit of the GARP complex. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-07-14

Peptides

Vacuolar protein sorting-associated protein 54: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vacuolar protein sorting-associated protein 54

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