SMTL ID : 3n6n.1

crystal structure of EV71 RdRp in complex with Br-UTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: W.5, H.271, H.273, C.282 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.271, A:C.282

1 x BUP: 5-bromouridine 5'-(tetrahydrogen triphosphate)(Non-covalent)

BUP.2: 13 residues within 4Å: Chain A: K.159, R.163, K.167, R.174, L.175, Y.234, S.235, G.236, Y.237, D.238, S.289, G.290, D.329 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:K.159, A:R.174, A:S.235, A:G.236, A:Y.237, A:D.238, A:D.238, A:D.238 Salt bridges: A:R.163, A:K.167, A:K.167, A:R.174 pi-Cation interactions: A:R.174 Halogen bonds: A:L.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structures of EV71 RNA-dependent RNA polymerase in complex with substrate and analogue provide a drug target against the hand-foot-and-mouth disease pandemic in China. Protein Cell (2010)

Release Date

2011-06-15

Peptides

RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-dependent RNA polymerase

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