SMTL ID : 3n9t.1

Cryatal structure of Hydroxyquinol 1,2-dioxygenase from Pseudomonas putida DLL-E4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HGX: 1-HEPTADECANOYL-2-TRIDECANOYL-3-GLYCEROL-PHOSPHONYL CHOLINE(Non-covalent)

HGX.1: 21 residues within 4Å: Chain A: F.42, E.52, W.53, E.55, G.56, I.57, F.59, F.75, L.78, S.79, E.204, A.208 Chain B: P.24, N.25, F.28, M.32, L.35, L.39, I.57, L.60 Ligands: HGX.4 13 PLIP interactions: 7 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:F.42, A:E.55, A:I.57, A:F.59, A:F.59, A:F.59, A:L.78, B:F.28, B:L.35, B:L.39, B:I.57, B:L.60 Hydrogen bonds: B:N.25 HGX.4: 21 residues within 4Å: Chain A: P.24, N.25, F.28, M.32, L.35, L.39, I.57, L.60 Chain B: F.42, E.52, W.53, E.55, G.56, I.57, F.59, F.75, L.78, S.79, E.204, A.208 Ligands: HGX.1 13 PLIP interactions: 6 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:F.28, A:L.35, A:L.39, A:I.57, A:L.60, B:F.42, B:E.55, B:I.57, B:F.59, B:F.59, B:F.59, B:L.78 Hydrogen bonds: A:N.25

2 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 13 residues within 4Å: Chain A: L.77, D.80, P.107, F.108, Y.160, Y.194, I.196, P.197, R.215, H.218, H.220, V.248 Ligands: FE.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.196 Salt bridges: A:R.215, A:R.215, A:H.218, A:H.220 FLC.5: 13 residues within 4Å: Chain B: L.77, D.80, P.107, F.108, Y.160, Y.194, I.196, P.197, R.215, H.218, H.220, V.248 Ligands: FE.6 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.196 Hydrogen bonds: B:D.80 Salt bridges: B:R.215, B:R.215, B:H.218, B:H.220

2 x FE: FE (III) ION(Non-covalent)

FE.3: 5 residues within 4Å: Chain A: Y.160, Y.194, H.218, H.220 Ligands: FLC.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.160, A:Y.194, A:H.218, A:H.220, H2O.1 FE.6: 5 residues within 4Å: Chain B: Y.160, Y.194, H.218, H.220 Ligands: FLC.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.160, B:Y.194, B:H.218, B:H.220, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Cryatal structure of Hydroxyquinol 1,2-dioxygenase from Pseudomonas putida DLL-E4. To be Published

Release Date

2010-08-04

Peptides

PnpC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PnpC