SMTL ID : 3na6.1

Crystal structure of a succinylglutamate desuccinylase (TM1040_2694) from SILICIBACTER SP. TM1040 at 2.00 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: H.59, R.101, N.109, N.111, R.112 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: H.59, R.101, N.109, N.111, R.112 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain C: H.59, R.101, N.109, N.111, R.112 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain D: H.59, R.101, N.109, N.111, R.112 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain E: H.59, R.101, N.109, N.111, R.112 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain F: H.59, R.101, N.109, N.111, R.112 Ligand excluded by PLIP

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: T.82, G.237 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.237, H2O.4, H2O.9, H2O.9, H2O.10 CA.5: 2 residues within 4Å: Chain B: T.82, G.237 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:G.237, H2O.16, H2O.21, H2O.22, H2O.22 CA.8: 2 residues within 4Å: Chain C: T.82, G.237 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:G.237, H2O.28, H2O.33, H2O.34, H2O.34 CA.11: 2 residues within 4Å: Chain D: T.82, G.237 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:G.237, H2O.40, H2O.46, H2O.46, H2O.46 CA.14: 2 residues within 4Å: Chain E: T.82, G.237 5 PLIP interactions: 1 interactions with chain E, 4 Ligand-Water interactions Metal complexes: E:G.237, H2O.53, H2O.58, H2O.58, H2O.58 CA.17: 2 residues within 4Å: Chain F: T.82, G.237 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:G.237, H2O.65, H2O.70, H2O.70, H2O.70

6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 8 residues within 4Å: Chain A: Q.45, G.47, A.48, G.49, K.50, T.51, G.83, R.84 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.49, A:T.51, A:G.83 Water bridges: A:Q.45, A:Q.45, A:G.47 TRS.6: 8 residues within 4Å: Chain B: Q.45, G.47, A.48, G.49, K.50, T.51, G.83, R.84 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.49, B:T.51, B:G.83 Water bridges: B:Q.45, B:Q.45, B:G.47 TRS.9: 8 residues within 4Å: Chain C: Q.45, G.47, A.48, G.49, K.50, T.51, G.83, R.84 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.49, C:T.51, C:G.83 Water bridges: C:Q.45, C:Q.45, C:G.47 TRS.12: 8 residues within 4Å: Chain D: Q.45, G.47, A.48, G.49, K.50, T.51, G.83, R.84 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.49, D:G.83 Water bridges: D:Q.45, D:Q.45, D:G.47 TRS.15: 8 residues within 4Å: Chain E: Q.45, G.47, A.48, G.49, K.50, T.51, G.83, R.84 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.49, E:G.83 Water bridges: E:Q.45, E:Q.45, E:G.47 TRS.18: 8 residues within 4Å: Chain F: Q.45, G.47, A.48, G.49, K.50, T.51, G.83, R.84 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.49, F:G.83 Water bridges: F:Q.45, F:Q.45, F:G.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a succinylglutamate desuccinylase (TM1040_2694) from SILICIBACTER SP. TM1040 at 2.00 A resolution. To be published

Release Date

2010-07-28

Peptides

Succinylglutamate desuccinylase/aspartoacylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Succinylglutamate desuccinylase/aspartoacylase