SMTL ID : 3ndr.1

Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: G.13, Q.16, G.17, I.18, D.37, I.38, A.59, D.60, I.61, N.87, A.88, S.89, V.91, V.110, I.138, A.139, S.140, Y.153, K.157, P.183, G.184, L.185, I.186, S.188, G.190, V.191 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.183 Hydrogen bonds: A:Q.16, A:Q.16, A:I.18, A:I.38, A:D.60, A:D.60, A:I.61, A:N.87, A:Y.153, A:K.157, A:I.186, A:I.186, A:S.188, A:S.188, A:G.190 Water bridges: A:G.19, A:G.19 NAD.2: 26 residues within 4Å: Chain B: G.13, Q.16, G.17, I.18, D.37, I.38, A.59, D.60, I.61, N.87, A.88, S.89, V.91, V.110, I.138, A.139, S.140, Y.153, K.157, P.183, G.184, L.185, I.186, S.188, G.190, V.191 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.183 Hydrogen bonds: B:Q.16, B:Q.16, B:I.18, B:I.38, B:D.60, B:I.61, B:N.87, B:S.89, B:K.157, B:I.186, B:I.186, B:S.188, B:S.188, B:D.189, B:G.190 Water bridges: B:G.19, B:N.87 NAD.3: 26 residues within 4Å: Chain C: G.13, Q.16, G.17, I.18, D.37, I.38, A.59, D.60, I.61, N.87, A.88, S.89, V.91, V.110, I.138, A.139, S.140, Y.153, K.157, P.183, G.184, L.185, I.186, S.188, G.190, V.191 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:P.183 Hydrogen bonds: C:G.13, C:G.13, C:Q.16, C:I.18, C:I.38, C:D.60, C:I.61, C:S.62, C:N.87, C:S.89, C:K.157, C:I.186, C:I.186, C:S.188, C:S.188, C:G.190 NAD.4: 26 residues within 4Å: Chain D: G.13, Q.16, G.17, I.18, D.37, I.38, A.59, D.60, I.61, N.87, A.88, S.89, V.91, V.110, I.138, A.139, S.140, Y.153, K.157, P.183, G.184, L.185, I.186, S.188, G.190, V.191 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:P.183, D:P.183 Hydrogen bonds: D:G.13, D:Q.16, D:Q.16, D:I.18, D:I.38, D:D.60, D:D.60, D:I.61, D:S.62, D:N.87, D:S.89, D:S.89, D:S.89, D:Y.153, D:K.157, D:I.186, D:I.186, D:S.188, D:S.188, D:G.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chu, H.N. et al., Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti. To be Published

Release Date

2011-06-08

Peptides

3-oxoacyl-(Acyl-carrier protein) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-(Acyl-carrier protein) reductase

Related Entries With Identical Sequence