SMTL ID : 3nf2.1

Crystal structure of polyprenyl synthetase from Streptomyces coelicolor A3(2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.55, R.58, H.87, R.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.55 Salt bridges: A:K.55, A:R.58, A:H.87, A:R.104 SO4.2: 4 residues within 4Å: Chain A: H.113, G.114, P.115, A.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.113, A:A.116 SO4.3: 4 residues within 4Å: Chain A: D.98, D.162, K.183, K.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.98 Water bridges: A:D.94 Salt bridges: A:K.183, A:K.248 SO4.4: 2 residues within 4Å: Chain A: H.113, Q.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.117, A:Q.117 Salt bridges: A:H.113 SO4.5: 1 residues within 4Å: Chain A: R.301 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.301 SO4.6: 5 residues within 4Å: Chain A: H.105, G.237, K.238, Q.239, S.242 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.237, A:Q.239, A:Q.239 Water bridges: A:Q.246, A:Q.246 Salt bridges: A:H.105 SO4.7: 4 residues within 4Å: Chain B: K.55, R.58, H.87, R.104 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.55 Salt bridges: B:K.55, B:R.58, B:H.87, B:R.104 SO4.8: 4 residues within 4Å: Chain B: H.113, G.114, P.115, A.116 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.113, B:A.116 SO4.9: 4 residues within 4Å: Chain B: D.98, D.162, K.183, K.248 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.98 Salt bridges: B:K.183, B:K.248 SO4.10: 2 residues within 4Å: Chain B: H.113, Q.117 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.117, B:Q.117 Salt bridges: B:H.113 SO4.11: 1 residues within 4Å: Chain B: R.301 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.301 SO4.12: 5 residues within 4Å: Chain B: H.105, G.237, K.238, Q.239, S.242 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.237, B:Q.239, B:Q.239 Water bridges: B:Q.246, B:Q.246 Salt bridges: B:H.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallrapp, F.H. et al., Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2010-08-04

Peptides

Putative polyprenyl synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative polyprenyl synthetase