- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x CDQ: 6-[(5-chloro-2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid(Non-covalent)
CDQ.4: 15 residues within 4Å:- Chain A: G.30, A.76, G.77, R.78, W.79, P.80, I.175, D.178, I.179
- Chain B: Y.54, N.155, H.156, S.166, G.168, E.169
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.166, B:S.166
- Salt bridges: B:H.156, B:R.158
- Hydrophobic interactions: A:P.80, A:P.80, A:I.175, A:I.179
CDQ.5: 9 residues within 4Å:- Chain A: V.48, V.50, G.53, I.55, V.121, M.125, E.128, L.129, H.154
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.55, A:V.121
- Water bridges: A:R.170
- Salt bridges: A:K.159
- pi-Cation interactions: A:H.154
CDQ.6: 11 residues within 4Å:- Chain A: A.140, E.141, H.142, T.145, M.149
- Chain B: Q.66, Y.70, T.96, A.99, A.100, W.103
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:T.145, B:Q.66, B:T.96, B:A.99
- Hydrogen bonds: A:E.141, A:H.142, A:H.142
- Salt bridges: A:H.142
CDQ.7: 15 residues within 4Å:- Chain A: N.155, H.156, R.158, S.166, G.168, E.169
- Chain B: P.29, G.30, A.76, G.77, R.78, W.79, P.80, I.175, D.178
9 PLIP interactions:3 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:P.80, B:P.80, B:I.175
- Hydrogen bonds: A:S.166, A:S.166
- Water bridges: A:R.158, A:R.158
- Salt bridges: A:H.156, A:R.158
CDQ.12: 12 residues within 4Å:- Chain A: Q.66, Y.70, T.96, A.99, A.100, W.103
- Chain B: A.140, E.141, H.142, K.144, T.145, M.149
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:T.145, A:Q.66, A:A.99
- Hydrogen bonds: B:E.141, B:H.142, B:T.145, B:T.145
- Salt bridges: B:H.142
CDQ.13: 10 residues within 4Å:- Chain B: V.48, V.50, G.53, I.55, V.121, M.125, E.128, L.129, H.154, K.159
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.48, B:I.55, B:V.121
- Water bridges: B:K.159
- Salt bridges: B:K.159
- pi-Cation interactions: B:H.154
- 2 x ACY: ACETIC ACID(Non-functional Binders)
ACY.8: 6 residues within 4Å:- Chain A: E.56, A.57, F.71, K.74, L.75
- Chain B: R.78
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.71, A:K.74
- Hydrogen bonds: A:E.56, A:A.57
- Salt bridges: A:K.74, B:R.78
ACY.14: 6 residues within 4Å:- Chain A: R.78
- Chain B: E.56, A.57, F.71, K.74, L.75
7 PLIP interactions:1 interactions with chain A, 6 interactions with chain B- Salt bridges: A:R.78, B:K.74
- Hydrophobic interactions: B:F.71, B:K.74
- Hydrogen bonds: B:E.56, B:E.56, B:A.57
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rhodes, D.I. et al., Structural basis for a new mechanism of inhibition of HIV-1 integrase identified by fragment screening and structure-based design. ANTIVIR.CHEM.CHEMOTHER. (2011)
- Release Date
- 2011-04-27
- Peptides
- Integrase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 3nf8.1
Structural basis for a new mechanism of inhibition of HIV integrase identified by fragment screening and structure based design
Integrase
Toggle Identical (AB)Related Entries With Identical Sequence
3av9.1 | 3ava.1 | 3avb.1 | 3avc.1 | 3avg.1 | 3avh.1 | 3avi.1 | 3avj.1 | 3avk.1 | 3avl.1 | 3avm.1 | 3avn.1 | 3nf6.1 | 3nf7.1 | 3nf9.1 | 3nfa.1 | 4ah9.1 | 4ahr.1 | 4ahs.1 | 4aht.1 | 4ahu.1 | 4ahv.1 | 4ce9.1 | 4cea.1 | 4ceb.1 | 4cec.1 | 4ced.1 | 4cee.1 | 4cef.1 | 4ceo.1 more...less...4ceq.1 | 4cer.1 | 4ces.1 | 4cez.1 | 4cf0.1 | 4cf1.1 | 4cf2.1 | 4cf8.1 | 4cf9.1 | 4cfa.1 | 4cfb.1 | 4cfc.1 | 4cfd.1 | 4cgd.1 | 4cgf.1 | 4cgg.1 | 4cgh.1 | 4cgi.1 | 4cgj.1 | 4chn.1 | 4cho.1 | 4chp.1 | 4chq.1 | 4chy.1 | 4chz.1 | 4cie.1 | 4cif.1 | 4cig.1 | 4cj3.1 | 4cj4.1 | 4cj5.1 | 4cje.1 | 4cjf.1 | 4cjk.1 | 4cjl.1 | 4cjp.1 | 4cjq.1 | 4cjr.1 | 4cjs.1 | 4cjt.1 | 4cju.1 | 4cjv.1 | 4cjw.1 | 4ck1.1 | 4ck2.1 | 4ck3.1 | 4ovl.1