SMTL ID : 3nfu.1

Crystal structure of probable glucarate dehydratase from chromohalobacter salexigens dsm 3043 complexed with magnesium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: N.24, H.29, T.100, Y.148, F.150, K.205, N.339, H.366, R.419 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.100, A:Y.148, A:Y.148, A:N.339 Water bridges: A:K.205, A:K.205, A:H.366, A:R.419 Salt bridges: A:H.29, A:K.205, A:H.366, A:R.419 SO4.2: 2 residues within 4Å: Chain A: R.374, K.403 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.374, A:K.403 SO4.5: 9 residues within 4Å: Chain B: N.24, H.29, T.100, Y.148, F.150, K.205, N.339, H.366, R.419 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.100, B:N.339 Water bridges: B:Y.148, B:K.205, B:H.366, B:R.419 Salt bridges: B:H.29, B:K.205, B:H.366, B:R.419 SO4.6: 2 residues within 4Å: Chain B: R.374, K.403 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.374, B:K.403 Salt bridges: B:R.374, B:K.403

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.233, N.235, E.258, D.259, N.287 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.233, A:D.233, A:E.258, A:D.259 MG.7: 5 residues within 4Å: Chain B: D.233, N.235, E.258, D.259, N.287 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.233, B:D.233, B:E.258, B:D.259

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: R.196, Y.197, D.371, Q.381, I.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.382, A:I.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Glucarate Dehydratase from Chromohalobacter Salexigens. To be Published

Release Date

2010-06-23

Peptides

Glucarate dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucarate dehydratase

Related Entries With Identical Sequence