SMTL ID : 3ngr.1

Crystal structure of Leishmania nucleoside diphosphate kinase b with unordered nucleotide-binding loop.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: K.11, R.87, T.93, R.104, C.116, H.117 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.11, A:R.87, A:R.104, A:H.117 PO4.2: 6 residues within 4Å: Chain B: K.11, R.87, T.93, R.104, C.116, H.117 4 PLIP interactions: 4 interactions with chain B Salt bridges: B:K.11, B:R.87, B:R.104, B:H.117 PO4.3: 6 residues within 4Å: Chain C: K.11, R.87, T.93, R.104, C.116, H.117 4 PLIP interactions: 4 interactions with chain C Salt bridges: C:K.11, C:R.87, C:R.104, C:H.117 PO4.4: 6 residues within 4Å: Chain D: K.11, R.87, T.93, R.104, C.116, H.117 4 PLIP interactions: 4 interactions with chain D Salt bridges: D:K.11, D:R.87, D:R.104, D:H.117 PO4.5: 6 residues within 4Å: Chain E: K.11, R.87, T.93, R.104, C.116, H.117 4 PLIP interactions: 4 interactions with chain E Salt bridges: E:K.11, E:R.87, E:R.104, E:H.117 PO4.6: 6 residues within 4Å: Chain F: K.11, R.87, T.93, R.104, C.116, H.117 4 PLIP interactions: 4 interactions with chain F Salt bridges: F:K.11, F:R.87, F:R.104, F:H.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Souza, T.A. et al., Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding. Mol Biosyst (2011)

Release Date

2011-04-27

Peptides

Nucleoside diphosphate kinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Nucleoside diphosphate kinase

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