SMTL ID : 3ngt.4 (7 other biounits)

Structure of Leishmania NDKb complexed with AMP.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 9 residues within 4Å: Chain A: K.11, Y.51, L.54, F.59, T.93, R.104, V.111, N.114, H.117 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.104, A:N.114, A:N.114 Water bridges: A:G.112 Salt bridges: A:K.11, A:H.117 pi-Stacking: A:F.59, A:F.59 AMP.2: 10 residues within 4Å: Chain B: K.11, Y.51, F.59, L.63, T.93, R.104, V.111, G.112, N.114, H.117 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.51, B:R.104 Salt bridges: B:K.11, B:H.117 pi-Stacking: B:F.59, B:F.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Souza, T.A. et al., Molecular adaptability of nucleoside diphosphate kinase b from trypanosomatid parasites: stability, oligomerization and structural determinants of nucleotide binding. Mol Biosyst (2011)

Release Date

2011-04-27

Peptides

Nucleoside diphosphate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

Nucleoside diphosphate kinase

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