SMTL ID : 3nja.4 (3 other biounits)

The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.99, H.101 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.99, A:H.101

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: H.73, R.78 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: H.73, R.78 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.98 Chain B: W.21, L.30, W.32, Y.54 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.21, B:W.32 GOL.4: 6 residues within 4Å: Chain A: W.21, L.30, W.32, Y.54 Chain B: Y.84, E.98 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.32, B:E.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472. To be Published

Release Date

2010-08-18

Peptides

Probable GGDEF family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Probable GGDEF family protein

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