SMTL ID : 3njp.3 (2 other biounits)

The Extracellular and Transmembrane Domain Interfaces in Epidermal Growth Factor Receptor Signaling

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: Q.28, N.32, N.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.28, A:N.33 NAG.2: 3 residues within 4Å: Chain A: N.91, S.92, N.151 No protein-ligand interaction detected (PLIP) NAG.3: 9 residues within 4Å: Chain A: S.324, L.325, S.326, N.328, N.331, V.350, D.355, T.358, T.360 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.325, A:V.350 Hydrogen bonds: A:S.324, A:L.325, A:S.326, A:N.328, A:N.331, A:T.358, A:T.360 NAG.4: 2 residues within 4Å: Chain A: R.503, N.504 No protein-ligand interaction detected (PLIP)

5 x 2PE: NONAETHYLENE GLYCOL(Non-functional Binders)(Non-covalent)

2PE.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) 2PE.6: 1 residues within 4Å: Ligands: 2PE.7 No protein-ligand interaction detected (PLIP) 2PE.7: 1 residues within 4Å: Ligands: 2PE.6 No protein-ligand interaction detected (PLIP) 2PE.8: 1 residues within 4Å: Ligands: 2PE.9 No protein-ligand interaction detected (PLIP) 2PE.9: 3 residues within 4Å: Chain B: P.3, S.5 Ligands: 2PE.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, C. et al., Structural evidence for loose linkage between ligand binding and kinase activation in the epidermal growth factor receptor. Mol.Cell.Biol. (2010)

Release Date

2010-10-13

Peptides

Epidermal growth factor receptor: A
Epidermal growth factor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Epidermal growth factor receptor

Epidermal growth factor

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