SMTL ID : 3nm8.1

Crystal structure of Tyrosinase from Bacillus megaterium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.42, H.60, H.69 Ligands: CU.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.42, A:H.60, H2O.2, H2O.2, H2O.2 CU.2: 5 residues within 4Å: Chain A: H.204, H.208, F.227, H.231 Ligands: CU.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.204, A:H.208, A:H.231, H2O.2 CU.9: 4 residues within 4Å: Chain B: H.42, H.60, H.69 Ligands: CU.10 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.42, B:H.60, H2O.8, H2O.8, H2O.13 CU.10: 5 residues within 4Å: Chain B: H.204, H.208, F.227, H.231 Ligands: CU.9 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.204, B:H.208, B:H.231, H2O.8

7 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.13, D.287 Ligands: CL.6, CL.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.13, A:D.287 ZN.4: 1 residues within 4Å: Chain A: H.279 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.279, H2O.1, H2O.2, H2O.2 ZN.5: 3 residues within 4Å: Chain A: T.175, H.245, Q.248 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.245 ZN.8: 2 residues within 4Å: Chain A: H.49 Chain B: N.144 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.49 ZN.11: 4 residues within 4Å: Chain B: H.13, D.287 Ligands: CL.14, CL.15 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.13, B:D.287 ZN.12: 3 residues within 4Å: Chain B: H.279 Ligands: CL.16, CL.17 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.279, H2O.9 ZN.13: 3 residues within 4Å: Chain B: E.71, R.75, T.271 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.71, B:E.71, H2O.8, H2O.10

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: K.9, H.13, D.287 Ligands: ZN.3, CL.7 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: H.13, D.287, I.288 Ligands: ZN.3, CL.6 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain B: H.13, D.287, I.288 Ligands: ZN.11, CL.15 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain B: K.9, H.13, D.287 Ligands: ZN.11, CL.14 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain B: A.239, H.279 Ligands: ZN.12, CL.17 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain B: A.239, I.243, H.279 Ligands: ZN.12, CL.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sendovski, M. et al., First structures of an active bacterial tyrosinase reveal copper plasticity. J.Mol.Biol. (2011)

Release Date

2010-11-17

Peptides

Tyrosinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosinase

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