SMTL ID : 3np7.1

Glycogen phosphorylase complexed with 2,5-dihydroxy-3-(beta-D-glucopyranosyl)-chlorobenzene and 2,5-dihydroxy-4-(beta-D-glucopyranosyl)-chlorobenzene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x Z15: (1S)-1,5-anhydro-1-(4-chloro-2,5-dihydroxyphenyl)-D-glucitol(Non-covalent)

Z15.1: 12 residues within 4Å: Chain A: R.16, Q.96, E.120, E.124, L.494, C.495, P.497, K.544, F.545, Y.548, E.654, K.655 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.544, A:K.655 Hydrogen bonds: A:R.16, A:Q.96, A:E.120, A:K.544, A:K.544, A:E.654, A:E.654, A:K.655 pi-Cation interactions: A:K.544, A:K.655 Z15.2: 18 residues within 4Å: Chain A: G.135, L.136, L.139, D.283, N.284, D.339, H.341, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 Ligands: Z16.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.377 Hydrogen bonds: A:G.135, A:L.136, A:N.284, A:E.672, A:A.673, A:S.674, A:S.674, A:G.675 Water bridges: A:G.137, A:T.676 Z15.4: 12 residues within 4Å: Chain B: R.16, Q.96, E.120, E.124, L.494, C.495, P.497, K.544, F.545, Y.548, E.654, K.655 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:K.544, B:K.655 Hydrogen bonds: B:R.16, B:Q.96, B:E.120, B:E.124, B:K.544, B:K.544, B:E.654, B:K.655 pi-Cation interactions: B:K.544, B:K.655 Z15.5: 18 residues within 4Å: Chain B: G.135, L.136, L.139, D.283, N.284, D.339, H.341, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 Ligands: Z16.6 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:H.377 Hydrogen bonds: B:G.135, B:L.136, B:N.284, B:H.377, B:Y.573, B:A.673, B:S.674, B:S.674, B:G.675 Water bridges: B:G.137, B:T.676

2 x Z16: (1S)-1,5-anhydro-1-(3-chloro-2,5-dihydroxyphenyl)-D-glucitol(Non-covalent)

Z16.3: 16 residues within 4Å: Chain A: E.88, G.135, L.136, L.139, D.283, N.284, D.339, H.377, T.378, N.484, Y.573, E.672, A.673, S.674, G.675 Ligands: Z15.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.136, A:H.377 Hydrogen bonds: A:L.136, A:N.284, A:E.672, A:A.673, A:S.674, A:S.674, A:G.675 Water bridges: A:G.135, A:G.137, A:T.676 Halogen bonds: A:E.88 Z16.6: 16 residues within 4Å: Chain B: E.88, G.135, L.136, L.139, D.283, N.284, D.339, H.377, T.378, N.484, Y.573, E.672, A.673, S.674, G.675 Ligands: Z15.5 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.136, B:H.377 Hydrogen bonds: B:L.136, B:N.284, B:H.377, B:A.673, B:S.674, B:S.674, B:G.675 Water bridges: B:G.135, B:G.137, B:Y.573, B:T.676 Halogen bonds: B:E.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alexacou, K.M. et al., Halogen-substituted (C-beta-D-glucopyranosyl)-hydroquinone regioisomers: synthesis, enzymatic evaluation and their binding to glycogen phosphorylase. Bioorg.Med.Chem. (2011)

Release Date

2011-06-08

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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