3nqu.1 | SWISS-MODEL Template Library

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SMTL ID : 3nqu.1

Crystal structure of partially trypsinized (CENP-A/H4)2 heterotetramer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	3 residues within 4Å: Chain A: R.118, V.119, T.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.119, A:T.120, A:T.120
SO4.2:	3 residues within 4Å: Chain A: F.78, R.80 Chain B: R.68 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.80, B:R.68
SO4.3:	3 residues within 4Å: Chain B: R.79, K.80, T.81 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.80, B:T.81
SO4.4:	4 residues within 4Å: Chain B: T.31, P.33, A.34, R.37 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.31, B:T.31, B:A.34 Salt bridges: B:R.37
SO4.5:	3 residues within 4Å: Chain B: K.32, P.33, R.36 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.32, B:R.36
SO4.6:	3 residues within 4Å: Chain C: R.118, V.119, T.120 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:V.119, C:T.120, C:T.120, C:T.120
SO4.7:	3 residues within 4Å: Chain C: F.78, R.80 Chain D: R.68 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Salt bridges: D:R.68, C:R.80
SO4.8:	3 residues within 4Å: Chain D: R.79, K.80, T.81 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.80, D:T.81, D:T.81
SO4.9:	4 residues within 4Å: Chain D: T.31, P.33, A.34, R.37 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.31, D:A.34 Salt bridges: D:R.37
SO4.10:	3 residues within 4Å: Chain D: K.32, P.33, R.36 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:K.32, D:R.36

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sekulic, N. et al., The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature (2010)

Release Date

2010-08-25

Peptides

Histone H3-like centromeric protein A: AC
Histone H4: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3-like centromeric protein A

Toggle Identical (AC)

Histone H4

Toggle Identical (BD)

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