SMTL ID : 3nra.1

Crystal structure of an aspartate aminotransferase (YP_354942.1) from Rhodobacter sphaeroides 2.4.1 at 2.15 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

11 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.136, N.190, Y.339, R.381 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: P.345, K.346 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: H.52, R.308, R.311 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: T.75, E.76, D.80, L.81 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: Y.74, R.285 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: P.36 Ligand excluded by PLIP CL.13: 7 residues within 4Å: Chain A: A.73, R.285, A.287, G.288 Chain B: S.258, G.259, R.261 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: H.52, R.308, R.311 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain B: T.75, E.76, D.80, L.81 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain B: Y.74, R.285 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain B: Y.136, N.190, Y.339, R.381 Ligand excluded by PLIP

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: P.152, V.153, Q.154, D.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.154 GOL.8: 3 residues within 4Å: Chain A: A.160, E.162, R.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.160, A:R.324 GOL.9: 2 residues within 4Å: Chain A: A.92, G.96 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.93 GOL.10: 4 residues within 4Å: Chain A: S.63, V.66, Q.67 Chain B: F.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.63 Water bridges: A:S.63 GOL.11: 6 residues within 4Å: Chain A: E.162, T.163, S.197, A.229, S.230, Q.335 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.163, A:S.230, A:S.230 Water bridges: A:A.198, A:S.230 GOL.18: 8 residues within 4Å: Chain B: E.162, T.163, R.164, V.195, S.197, A.229, S.230, Q.335 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.163, B:S.230 Water bridges: B:V.195, B:A.198, B:Q.335, B:Q.335 GOL.19: 4 residues within 4Å: Chain B: P.152, V.153, Q.154, D.168 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.154, B:D.168 GOL.20: 4 residues within 4Å: Chain B: R.225, S.230, Y.231, H.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.231, B:H.233

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.12: 7 residues within 4Å: Chain A: E.162, A.227, G.228, A.229, R.316, T.333, Q.335 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.162, A:A.227, A:R.316, A:R.316, A:Q.335 Water bridges: A:T.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an aspartate aminotransferase (YP_354942.1) from Rhodobacter sphaeroides 2.4.1 at 2.15 A resolution. To be published

Release Date

2010-08-04

Peptides

aspartate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

aspartate aminotransferase