SMTL ID : 3nrj.3 (2 other biounits)

Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a complexed with magnesium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: T.49, G.52, R.79 Chain D: L.35 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: L.35 Chain B: T.49, G.52, R.79 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: R.34 Chain C: R.34 Chain D: R.34 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: L.35 Chain C: T.49, G.52, R.79 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: L.35 Chain D: T.49, G.52, R.79 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.25, D.27, D.118 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.25, A:D.27, A:D.118, H2O.1, H2O.1, H2O.3 MG.5: 3 residues within 4Å: Chain B: D.25, D.27, D.118 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.25, B:D.27, B:D.118, H2O.4, H2O.6, H2O.6 MG.10: 5 residues within 4Å: Chain C: D.25, D.27, D.118, D.122 Ligands: PO4.11 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.25, C:D.27, C:D.118, H2O.7, H2O.8, H2O.9 MG.12: 3 residues within 4Å: Chain D: D.25, D.27, D.118 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.25, D:D.27, D:D.118, H2O.10, H2O.10, H2O.10

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: D.25, S.69, G.70, K.95, P.121, D.122 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.25, A:G.70 Water bridges: A:D.25, A:D.25, A:V.26, A:D.27, A:D.27 Salt bridges: A:K.95 PO4.6: 5 residues within 4Å: Chain B: D.25, S.69, G.70, K.95, P.121 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.70 Water bridges: B:V.26, B:D.27, B:D.27, B:D.27 Salt bridges: B:K.95 PO4.11: 6 residues within 4Å: Chain C: D.25, S.69, G.70, K.95, P.121 Ligands: MG.10 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.25, C:G.70 Water bridges: C:V.26, C:D.27 Salt bridges: C:K.95 PO4.13: 7 residues within 4Å: Chain D: D.25, I.68, S.69, G.70, R.71, K.95, P.121 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:D.25, D:D.25, D:G.70, D:E.93 Water bridges: D:V.26, D:D.27, D:D.27 Salt bridges: D:K.95

1 x UNL: UNKNOWN LIGAND

UNL.14: 4 residues within 4Å: Chain D: K.17, A.169, Q.170, G.171 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Had Family Hydrolase from Pseudomonas Syringae Pv.Phaseolica 1448A. To be Published

Release Date

2010-07-28

Peptides

PROBABLE YRBI FAMILY PHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
I

PROBABLE YRBI FAMILY PHOSPHATASE

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