SMTL ID : 3ns8.3 (2 other biounits)

Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: K.27, Q.49, L.50, E.51, D.52, R.72 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.49, A:D.52, A:R.72 Water bridges: A:K.27, A:K.27, A:K.27

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 4 residues within 4Å: Chain A: F.45, S.65, T.66, H.68 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.65 Water bridges: A:A.46, A:G.47, A:T.66, A:T.66 Salt bridges: A:H.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, M.Y. et al., Structural and biochemical studies of the open state of Lys48-linked diubiquitin. Biochim.Biophys.Acta (2012)

Release Date

2011-07-20

Peptides

Ubiquitin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ubiquitin

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