SMTL ID : 3nst.1

Crystal Structure of Salicylate 1,2-dioxygenase G106A mutant from Pseudoaminobacter salicylatoxidans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.119, H.121, H.160 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.121, A:H.160 FE2.8: 4 residues within 4Å: Chain B: H.119, H.121, H.160 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.119, B:H.121, B:H.160 FE2.15: 4 residues within 4Å: Chain C: H.119, H.121, H.160 Ligands: GOL.21 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.119, C:H.121, C:H.160 FE2.22: 4 residues within 4Å: Chain D: H.119, H.121, H.160 Ligands: GOL.28 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.119, D:H.121, D:H.160

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: F.189, F.191 Chain B: G.43, D.44, M.46, I.48 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: R.265, E.282, R.295, E.297, R.347 Chain C: L.219 Ligand excluded by PLIP GOL.4: 7 residues within 4Å: Chain A: F.204, E.208, R.209, C.212, H.213, F.237 Chain C: E.244 Ligand excluded by PLIP GOL.5: 3 residues within 4Å: Chain A: R.148, F.306, E.307 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: E.291, T.292, S.336, L.337, Q.338, E.365 Ligand excluded by PLIP GOL.7: 8 residues within 4Å: Chain A: H.119, H.121, A.125, R.127, H.160, D.174, L.176 Ligands: FE2.1 Ligand excluded by PLIP GOL.9: 6 residues within 4Å: Chain A: G.43, D.44, M.46, I.48 Chain B: F.189, F.191 Ligand excluded by PLIP GOL.10: 6 residues within 4Å: Chain B: R.265, E.282, R.295, E.297, R.347 Chain D: L.219 Ligand excluded by PLIP GOL.11: 7 residues within 4Å: Chain B: F.204, E.208, R.209, C.212, H.213, F.237 Chain D: E.244 Ligand excluded by PLIP GOL.12: 3 residues within 4Å: Chain B: R.148, F.306, E.307 Ligand excluded by PLIP GOL.13: 6 residues within 4Å: Chain B: E.291, T.292, S.336, L.337, Q.338, E.365 Ligand excluded by PLIP GOL.14: 8 residues within 4Å: Chain B: H.119, H.121, A.125, R.127, H.160, D.174, L.176 Ligands: FE2.8 Ligand excluded by PLIP GOL.16: 6 residues within 4Å: Chain C: F.189, F.191 Chain D: G.43, D.44, M.46, I.48 Ligand excluded by PLIP GOL.17: 6 residues within 4Å: Chain A: L.219 Chain C: R.265, E.282, R.295, E.297, R.347 Ligand excluded by PLIP GOL.18: 7 residues within 4Å: Chain A: E.244 Chain C: F.204, E.208, R.209, C.212, H.213, F.237 Ligand excluded by PLIP GOL.19: 3 residues within 4Å: Chain C: R.148, F.306, E.307 Ligand excluded by PLIP GOL.20: 6 residues within 4Å: Chain C: E.291, T.292, S.336, L.337, Q.338, E.365 Ligand excluded by PLIP GOL.21: 8 residues within 4Å: Chain C: H.119, H.121, A.125, R.127, H.160, D.174, L.176 Ligands: FE2.15 Ligand excluded by PLIP GOL.23: 6 residues within 4Å: Chain C: G.43, D.44, M.46, I.48 Chain D: F.189, F.191 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain B: L.219 Chain D: R.265, E.282, R.295, E.297, R.347 Ligand excluded by PLIP GOL.25: 7 residues within 4Å: Chain B: E.244 Chain D: F.204, E.208, R.209, C.212, H.213, F.237 Ligand excluded by PLIP GOL.26: 3 residues within 4Å: Chain D: R.148, F.306, E.307 Ligand excluded by PLIP GOL.27: 6 residues within 4Å: Chain D: E.291, T.292, S.336, L.337, Q.338, E.365 Ligand excluded by PLIP GOL.28: 8 residues within 4Å: Chain D: H.119, H.121, A.125, R.127, H.160, D.174, L.176 Ligands: FE2.22 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraroni, M. et al., The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate. FEBS J. (2013)

Release Date

2011-07-13

Peptides

Gentisate 1,2-dioxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Gentisate 1,2-dioxygenase

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