SMTL ID : 3ntt.4 (5 other biounits)

Structural insights of Adeno-Associated virus 5. A gene therapy Vector for Cystic Fibrosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.277, N.530, S.531, P.533, L.548, Q.604, T.711 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.277, A:R.277, A:Q.604, A:T.711, A:T.711 GOL.5: 8 residues within 4Å: Chain A: D.652 Chain B: R.277, N.530, S.531, P.533, L.548, Q.604, T.711 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.652, B:R.277, B:R.277, B:Q.604, B:T.711, B:T.711 GOL.9: 8 residues within 4Å: Chain C: R.277, N.530, S.531, P.533, L.548, Q.604, T.711 Chain D: D.652 6 PLIP interactions: 1 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:D.652, C:R.277, C:R.277, C:Q.604, C:T.711, C:T.711 GOL.13: 7 residues within 4Å: Chain D: R.277, N.530, S.531, P.533, L.548, Q.604, T.711 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.277, D:R.277, D:Q.604, D:T.711 GOL.17: 7 residues within 4Å: Chain E: R.277, N.530, S.531, P.533, L.548, Q.604, T.711 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:R.277, E:R.277, E:Q.604, E:T.711, E:T.711 GOL.21: 8 residues within 4Å: Chain E: D.652 Chain F: R.277, N.530, S.531, P.533, L.548, Q.604, T.711 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:R.277, F:R.277, F:Q.604, F:T.711, F:T.711, E:D.652

18 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: N.243 Ligand excluded by PLIP NA.3: 1 residues within 4Å: Chain A: N.407 Ligand excluded by PLIP NA.4: 1 residues within 4Å: Chain A: T.541 Ligand excluded by PLIP NA.6: 1 residues within 4Å: Chain B: N.243 Ligand excluded by PLIP NA.7: 1 residues within 4Å: Chain B: N.407 Ligand excluded by PLIP NA.8: 1 residues within 4Å: Chain B: T.541 Ligand excluded by PLIP NA.10: 1 residues within 4Å: Chain C: N.243 Ligand excluded by PLIP NA.11: 1 residues within 4Å: Chain C: N.407 Ligand excluded by PLIP NA.12: 1 residues within 4Å: Chain C: T.541 Ligand excluded by PLIP NA.14: 1 residues within 4Å: Chain D: N.243 Ligand excluded by PLIP NA.15: 1 residues within 4Å: Chain D: N.407 Ligand excluded by PLIP NA.16: 1 residues within 4Å: Chain D: T.541 Ligand excluded by PLIP NA.18: 1 residues within 4Å: Chain E: N.243 Ligand excluded by PLIP NA.19: 1 residues within 4Å: Chain E: N.407 Ligand excluded by PLIP NA.20: 1 residues within 4Å: Chain E: T.541 Ligand excluded by PLIP NA.22: 1 residues within 4Å: Chain F: N.243 Ligand excluded by PLIP NA.23: 1 residues within 4Å: Chain F: N.407 Ligand excluded by PLIP NA.24: 1 residues within 4Å: Chain F: T.541 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Govindasamy, L. et al., Structural insights into adeno-associated virus serotype 5. J.Virol. (2013)

Release Date

2011-12-07

Peptides

Capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Capsid protein

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