SMTL ID : 3nu3.1

Wild Type HIV-1 Protease with Antiviral Drug Amprenavir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.02 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: D.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.60, A:D.60 Water bridges: A:R.41

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

1 x 478: {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER(Non-covalent)

478.3: 20 residues within 4Å: Chain A: D.25, G.27, A.28, D.30, I.47, G.48, G.49, I.50, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, I.84 22 PLIP interactions: 11 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:I.47, A:I.50, A:I.84, B:L.23, B:A.28, B:I.84 Hydrogen bonds: A:D.29, A:D.30, A:D.30, B:G.27, B:G.27, B:G.27, B:D.29, B:D.30 Water bridges: A:D.30, A:I.50, A:I.50, B:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain B: T.12, I.13, K.14, E.65, A.67, G.68 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.68 Water bridges: B:T.12, B:A.67 GOL.7: 8 residues within 4Å: Chain B: T.12, I.13, K.14, E.65, I.66, A.67, G.68 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.12, B:E.65, B:A.67, B:G.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, C.H. et al., Amprenavir complexes with HIV-1 protease and its drug-resistant mutants altering hydrophobic clusters. Febs J. (2010)

Release Date

2010-08-25

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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