- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
- 4 x SAL: 2-HYDROXYBENZOIC ACID(Non-covalent)
SAL.2: 9 residues within 4Å:- Chain A: Q.108, H.119, H.121, R.127, H.160, D.174
- Chain B: L.38, M.46
- Ligands: FE2.1
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.127, A:R.127, A:R.127, A:W.172
- Salt bridges: A:H.119, A:H.121, A:R.127, A:H.160
- Hydrophobic interactions: B:L.38
SAL.7: 9 residues within 4Å:- Chain A: L.38, M.46
- Chain B: Q.108, H.119, H.121, R.127, H.160, D.174
- Ligands: FE2.6
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.127, B:R.127, B:R.127, B:W.172
- Salt bridges: B:H.119, B:H.121, B:R.127, B:H.160
- Hydrophobic interactions: A:L.38
SAL.12: 9 residues within 4Å:- Chain C: Q.108, H.119, H.121, R.127, H.160, D.174
- Chain D: L.38, M.46
- Ligands: FE2.11
11 PLIP interactions:10 interactions with chain C, 1 interactions with chain D- Water bridges: C:R.127, C:T.154, C:T.154, C:W.172, C:D.174, C:D.174
- Salt bridges: C:H.119, C:H.121, C:R.127, C:H.160
- Hydrophobic interactions: D:L.38
SAL.17: 9 residues within 4Å:- Chain C: L.38, M.46
- Chain D: Q.108, H.119, H.121, R.127, H.160, D.174
- Ligands: FE2.16
11 PLIP interactions:10 interactions with chain D, 1 interactions with chain C- Water bridges: D:R.127, D:T.154, D:T.154, D:W.172, D:D.174, D:D.174
- Salt bridges: D:H.119, D:H.121, D:R.127, D:H.160
- Hydrophobic interactions: C:L.38
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: R.265, E.282, R.295, E.297, R.347
- Chain C: L.219
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.265, A:E.282, A:E.297, A:R.347, A:R.347
- Water bridges: A:R.295
GOL.4: 7 residues within 4Å:- Chain A: L.38, Q.41, L.42, G.43, L.45
- Chain B: R.83
- Ligands: GOL.5
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.41, A:L.45, B:R.83
GOL.5: 6 residues within 4Å:- Chain A: G.43, M.46, I.48
- Chain B: F.189, F.191
- Ligands: GOL.4
No protein-ligand interaction detected (PLIP)GOL.8: 6 residues within 4Å:- Chain B: R.265, E.282, R.295, E.297, R.347
- Chain D: L.219
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.265, B:E.282, B:E.297, B:R.347, B:R.347
- Water bridges: B:R.295
GOL.9: 7 residues within 4Å:- Chain A: R.83
- Chain B: L.38, Q.41, L.42, G.43, L.45
- Ligands: GOL.10
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.41, B:L.45, A:R.83
GOL.10: 6 residues within 4Å:- Chain A: F.189, F.191
- Chain B: G.43, M.46, I.48
- Ligands: GOL.9
No protein-ligand interaction detected (PLIP)GOL.13: 6 residues within 4Å:- Chain A: L.219
- Chain C: R.265, E.282, R.295, E.297, R.347
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.265, C:E.282, C:E.297, C:R.347, C:R.347
- Water bridges: C:R.295
GOL.14: 7 residues within 4Å:- Chain C: L.38, Q.41, L.42, G.43, L.45
- Chain D: R.83
- Ligands: GOL.15
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:R.83, C:Q.41, C:L.45
GOL.15: 6 residues within 4Å:- Chain C: G.43, M.46, I.48
- Chain D: F.189, F.191
- Ligands: GOL.14
No protein-ligand interaction detected (PLIP)GOL.18: 6 residues within 4Å:- Chain B: L.219
- Chain D: R.265, E.282, R.295, E.297, R.347
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.265, D:E.282, D:E.297, D:R.347, D:R.347
- Water bridges: D:R.295
GOL.19: 7 residues within 4Å:- Chain C: R.83
- Chain D: L.38, Q.41, L.42, G.43, L.45
- Ligands: GOL.20
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:Q.41, D:L.45, C:R.83
GOL.20: 6 residues within 4Å:- Chain C: F.189, F.191
- Chain D: G.43, M.46, I.48
- Ligands: GOL.19
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraroni, M. et al., The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate. FEBS J. (2013)
- Release Date
- 2011-07-13
- Peptides
- Gentisate 1,2-Dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
- 4 x SAL: 2-HYDROXYBENZOIC ACID(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraroni, M. et al., The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate. FEBS J. (2013)
- Release Date
- 2011-07-13
- Peptides
- Gentisate 1,2-Dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A