- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
- 4 x GTQ: 2,5-dihydroxybenzoic acid(Non-covalent)
GTQ.2: 16 residues within 4Å:- Chain A: R.83, A.85, W.104, A.106, Q.108, H.119, H.121, R.127, H.160, H.162, D.174, L.176, I.178
- Chain B: L.38, M.46
- Ligands: FE2.1
13 PLIP interactions:1 interactions with chain B, 12 interactions with chain A- Hydrophobic interactions: B:L.38, A:R.83, A:L.176, A:L.176, A:I.178
- Hydrogen bonds: A:W.104
- Water bridges: A:R.127, A:R.127
- Salt bridges: A:R.83, A:H.119, A:R.127, A:H.160, A:H.162
GTQ.8: 16 residues within 4Å:- Chain A: L.38, M.46
- Chain B: R.83, A.85, W.104, A.106, Q.108, H.119, H.121, R.127, H.160, H.162, D.174, L.176, I.178
- Ligands: FE2.7
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:R.83, B:L.176, B:L.176, B:I.178, A:L.38
- Hydrogen bonds: B:W.104
- Water bridges: B:R.127, B:R.127
- Salt bridges: B:R.83, B:H.119, B:R.127, B:H.160, B:H.162
GTQ.14: 16 residues within 4Å:- Chain C: R.83, A.85, W.104, A.106, Q.108, H.119, H.121, R.127, H.160, H.162, D.174, L.176, I.178
- Chain D: L.38, M.46
- Ligands: FE2.13
14 PLIP interactions:1 interactions with chain D, 13 interactions with chain C- Hydrophobic interactions: D:L.38, C:R.83, C:L.176, C:L.176, C:I.178
- Hydrogen bonds: C:W.104, C:D.174
- Water bridges: C:R.127, C:R.127
- Salt bridges: C:R.83, C:H.119, C:R.127, C:H.160, C:H.162
GTQ.20: 16 residues within 4Å:- Chain C: L.38, M.46
- Chain D: R.83, A.85, W.104, A.106, Q.108, H.119, H.121, R.127, H.160, H.162, D.174, L.176, I.178
- Ligands: FE2.19
14 PLIP interactions:13 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:R.83, D:L.176, D:L.176, D:I.178, C:L.38
- Hydrogen bonds: D:W.104, D:D.174
- Water bridges: D:R.127, D:R.127
- Salt bridges: D:R.83, D:H.119, D:R.127, D:H.160, D:H.162
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: F.204, E.208, R.209, C.212, H.213, F.237
- Chain C: E.244
Ligand excluded by PLIPGOL.4: 7 residues within 4Å:- Chain A: V.257, R.265, E.282, R.295, E.297, R.347
- Chain C: L.219
Ligand excluded by PLIPGOL.5: 6 residues within 4Å:- Chain A: E.291, T.292, V.313, S.336, Q.338, E.365
Ligand excluded by PLIPGOL.6: 4 residues within 4Å:- Chain A: L.65, R.69, Y.109, P.169
Ligand excluded by PLIPGOL.9: 7 residues within 4Å:- Chain B: F.204, E.208, R.209, C.212, H.213, F.237
- Chain D: E.244
Ligand excluded by PLIPGOL.10: 7 residues within 4Å:- Chain B: V.257, R.265, E.282, R.295, E.297, R.347
- Chain D: L.219
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain B: E.291, T.292, V.313, S.336, Q.338, E.365
Ligand excluded by PLIPGOL.12: 4 residues within 4Å:- Chain B: L.65, R.69, Y.109, P.169
Ligand excluded by PLIPGOL.15: 7 residues within 4Å:- Chain A: E.244
- Chain C: F.204, E.208, R.209, C.212, H.213, F.237
Ligand excluded by PLIPGOL.16: 7 residues within 4Å:- Chain A: L.219
- Chain C: V.257, R.265, E.282, R.295, E.297, R.347
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain C: E.291, T.292, V.313, S.336, Q.338, E.365
Ligand excluded by PLIPGOL.18: 4 residues within 4Å:- Chain C: L.65, R.69, Y.109, P.169
Ligand excluded by PLIPGOL.21: 7 residues within 4Å:- Chain B: E.244
- Chain D: F.204, E.208, R.209, C.212, H.213, F.237
Ligand excluded by PLIPGOL.22: 7 residues within 4Å:- Chain B: L.219
- Chain D: V.257, R.265, E.282, R.295, E.297, R.347
Ligand excluded by PLIPGOL.23: 6 residues within 4Å:- Chain D: E.291, T.292, V.313, S.336, Q.338, E.365
Ligand excluded by PLIPGOL.24: 4 residues within 4Å:- Chain D: L.65, R.69, Y.109, P.169
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraroni, M. et al., The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate. FEBS J. (2013)
- Release Date
- 2011-07-13
- Peptides
- Gentisate 1,2-Dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE2: FE (II) ION(Non-covalent)
- 4 x GTQ: 2,5-dihydroxybenzoic acid(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraroni, M. et al., The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate. FEBS J. (2013)
- Release Date
- 2011-07-13
- Peptides
- Gentisate 1,2-Dioxygenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A