- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.76 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x MRY: MESO-ERYTHRITOL(Non-covalent)
MRY.3: 7 residues within 4Å:- Chain A: M.136, Y.138, R.162, T.264, D.266
- Chain B: N.682, H.685
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.162, A:R.162, A:R.162, B:N.682, B:N.682
MRY.4: 7 residues within 4Å:- Chain A: N.126, A.128, Y.130, Y.257, S.335, V.336, C.337
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.126, A:A.128, A:Y.257, A:S.335, A:C.337
MRY.9: 7 residues within 4Å:- Chain B: M.136, Y.138, R.162, T.264, D.266
- Chain C: N.682, H.685
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:R.162, B:R.162, B:R.162, C:N.682, C:N.682
MRY.10: 7 residues within 4Å:- Chain B: N.126, A.128, Y.130, Y.257, S.335, V.336, C.337
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.126, B:A.128, B:Y.257, B:S.335, B:C.337
MRY.15: 7 residues within 4Å:- Chain A: N.682, H.685
- Chain C: M.136, Y.138, R.162, T.264, D.266
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:N.682, A:N.682, C:R.162, C:R.162, C:R.162
MRY.16: 7 residues within 4Å:- Chain C: N.126, A.128, Y.130, Y.257, S.335, V.336, C.337
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.126, C:A.128, C:Y.257, C:S.335, C:C.337
- 3 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stampfer, S.D. et al., Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1. J.Virol. (2010)
- Release Date
- 2010-12-01
- Peptides
- Envelope glycoprotein B: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.76 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x MRY: MESO-ERYTHRITOL(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stampfer, S.D. et al., Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1. J.Virol. (2010)
- Release Date
- 2010-12-01
- Peptides
- Envelope glycoprotein B: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B