SMTL ID : 3nwd.4 (3 other biounits)

Glycoprotein B from Herpes simplex virus type 1, Y179S mutant, low-pH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-trimer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: E.111, G.112, Q.113, N.114 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: E.111, G.112, Q.113, N.114 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain C: E.111, G.112, Q.113, N.114 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.371, N.418 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: N.371, N.418 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain C: N.371, N.418 No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: N.126, C.337 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: N.126, C.337 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: N.126, C.337 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stampfer, S.D. et al., Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1. J.Virol. (2010)

Release Date

2010-12-01

Peptides

Envelope glycoprotein B: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
D

C
D

Envelope glycoprotein B

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