SMTL ID : 3nxk.1 (1 other biounit)

Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.18, T.19, A.35, D.65, S.66, G.97, T.98, D.99 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:T.19, A:D.65, A:D.65, A:S.66, A:T.98, A:D.99 Water bridges: A:I.20, A:Y.33, A:Y.33 SO4.2: 4 residues within 4Å: Chain A: S.114, D.115, K.116, K.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.115, A:K.116 Salt bridges: A:K.116 SO4.5: 8 residues within 4Å: Chain B: G.18, T.19, A.35, D.65, S.66, G.97, T.98, D.99 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.19, B:S.66, B:T.98, B:D.99, B:D.99 Water bridges: B:T.19, B:I.20 SO4.6: 5 residues within 4Å: Chain B: K.113, S.114, D.115, K.116, K.208 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.114, B:D.115, B:K.116 Salt bridges: B:K.208 SO4.10: 9 residues within 4Å: Chain C: G.18, T.19, Y.33, A.35, D.65, S.66, G.97, T.98, D.99 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.19, C:D.65, C:S.66, C:T.98, C:T.98, C:D.99 Water bridges: C:T.19, C:T.19, C:I.20 SO4.11: 4 residues within 4Å: Chain C: S.114, D.115, K.116, K.208 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.115, C:K.116 Salt bridges: C:K.116, C:K.208 SO4.14: 7 residues within 4Å: Chain D: G.18, T.19, D.65, S.66, G.97, T.98, D.99 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:T.19, D:T.19, D:D.65, D:S.66, D:T.98, D:D.99, D:D.99 Water bridges: D:H.96, D:A.123 SO4.15: 2 residues within 4Å: Chain D: S.114, D.115 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.114, D:D.115, D:D.115 Salt bridges: D:K.116

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 3 residues within 4Å: Chain A: T.321, S.322, D.323 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.321, A:S.322, A:D.323 ACY.13: 7 residues within 4Å: Chain A: F.197, Y.199 Chain C: R.167, K.204, C.287, E.303, D.304 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.167 Salt bridges: C:K.204 Hydrophobic interactions: A:F.197

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: N.147, G.194, K.195, V.196, F.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.194, A:V.196 GOL.7: 4 residues within 4Å: Chain B: P.211, Y.330, K.333, Y.334 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.330 GOL.8: 6 residues within 4Å: Chain B: I.259, K.261, K.264, D.265, K.268 Chain C: N.68 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:K.268, B:K.268, C:N.68 Water bridges: B:K.261, B:K.261 GOL.9: 5 residues within 4Å: Chain B: E.295, K.325, Q.328, E.329, L.332 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.329, B:E.329 GOL.12: 3 residues within 4Å: Chain C: K.320, T.321, S.322 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.322, C:S.322, C:D.323 GOL.16: 4 residues within 4Å: Chain D: T.321, S.322, D.323, K.326 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.321, D:S.322, D:K.326, D:K.326 Water bridges: D:S.322, D:D.323 GOL.17: 4 residues within 4Å: Chain D: K.261, K.264, K.268, D.294 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:K.264, D:K.268, D:D.294, A:N.68 Water bridges: D:I.259, D:K.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni. To be Published

Release Date

2010-08-04

Peptides

Cytoplasmic L-asparaginase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cytoplasmic L-asparaginase

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