SMTL ID : 3nxk.2 (1 other biounit)

Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.18, T.19, D.65, S.66, G.97, T.98, D.99 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:S.66, A:S.66, A:T.98, A:D.99 Water bridges: A:T.19, A:I.20 SO4.2: 4 residues within 4Å: Chain A: S.114, D.115, K.116, K.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.115, A:D.115, A:K.116 Salt bridges: A:K.208 SO4.6: 7 residues within 4Å: Chain B: G.18, T.19, D.65, S.66, G.97, T.98, D.99 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.19, B:S.66, B:T.98, B:T.98, B:D.99 Water bridges: B:T.19, B:T.19 SO4.7: 4 residues within 4Å: Chain B: S.114, D.115, K.116, K.208 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.114, B:D.115, B:K.116 Salt bridges: B:K.208 SO4.9: 7 residues within 4Å: Chain C: G.18, T.19, D.65, S.66, G.97, T.98, D.99 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.19, C:T.19, C:S.66, C:T.98, C:D.99, C:D.99 Water bridges: C:D.65, B:S.258 SO4.10: 3 residues within 4Å: Chain C: S.114, D.115, K.116 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.115, C:K.116 Salt bridges: C:K.116, C:K.151 SO4.11: 9 residues within 4Å: Chain D: G.18, T.19, Y.33, A.35, D.65, S.66, G.97, T.98, D.99 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:T.19, D:T.19, D:D.65, D:S.66, D:T.98, D:D.99 Water bridges: D:T.19, D:I.20 SO4.12: 4 residues within 4Å: Chain D: S.114, D.115, K.116, K.208 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.115, D:K.116 Salt bridges: D:K.208

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: I.259, K.261, K.264, K.268 Chain D: N.68 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:N.68, A:I.259 GOL.4: 2 residues within 4Å: Chain A: K.239, K.273 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.239, A:K.239, A:K.273, A:K.273 GOL.5: 10 residues within 4Å: Chain A: R.125, S.131, D.133, N.160, V.177 Chain B: R.125, S.131, A.132, D.133, V.177 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.125, A:R.125, A:S.131, A:N.160, B:R.125, B:R.125 Water bridges: A:N.137, B:N.160

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.8: 2 residues within 4Å: Chain B: T.321, S.322 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.322, B:D.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni. To be Published

Release Date

2010-08-04

Peptides

Cytoplasmic L-asparaginase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Cytoplasmic L-asparaginase

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