SMTL ID : 3ny3.1

Structure of the ubr-box of UBR2 in complex with N-degron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x ARG- ILE- PHE- SER: N-degron(Non-covalent)

ARG-ILE-PHE-SER.1: 11 residues within 4Å: Chain A: P.27, T.28, C.29, V.30, G.53, G.54, G.55, F.56, D.58, D.61, A.64 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.28, A:F.56, A:D.58 Water bridges: A:T.28, A:G.54 Salt bridges: A:D.58, A:D.61

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.7, C.32, C.35, C.57 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.32, A:C.35, A:C.57 ZN.3: 4 residues within 4Å: Chain A: C.35, C.59, C.71, H.74 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.35, A:C.59, A:C.71, A:H.74 ZN.4: 4 residues within 4Å: Chain A: C.20, C.23, H.41, H.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:H.41, A:H.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matta-Camacho, E. et al., Structural basis of substrate recognition and specificity in the N-end rule pathway. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-08-11

Peptides

E3 ubiquitin-protein ligase UBR2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase UBR2

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