- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 26 residues within 4Å:- Chain A: G.41, S.43, Y.44, G.45, I.46, N.64, D.65, I.66, L.70, C.90, D.91, V.92, N.118, A.119, G.120, I.121, I.141, I.168, C.169, Y.183, K.187, P.213, I.216, T.218
- Ligands: CA.1, GCO.3
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:I.46, A:P.213
- Hydrogen bonds: A:G.41, A:Y.44, A:I.46, A:D.91, A:D.91, A:V.92, A:N.118, A:G.120, A:G.120, A:K.187, A:I.216
- Water bridges: A:S.43, A:G.47, A:N.118, A:I.121, A:I.216
NAP.5: 26 residues within 4Å:- Chain B: G.41, S.43, Y.44, G.45, I.46, N.64, D.65, I.66, L.70, C.90, D.91, V.92, N.118, A.119, G.120, I.121, I.141, I.168, C.169, Y.183, K.187, P.213, I.216, T.218
- Ligands: CA.4, GCO.6
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:I.46, B:P.213
- Hydrogen bonds: B:G.41, B:Y.44, B:I.46, B:D.91, B:D.91, B:V.92, B:N.118, B:G.120, B:G.120, B:K.187, B:I.216
- Water bridges: B:S.43, B:G.47, B:N.118, B:I.121, B:I.216
NAP.8: 26 residues within 4Å:- Chain C: G.41, S.43, Y.44, G.45, I.46, N.64, D.65, I.66, L.70, C.90, D.91, V.92, N.118, A.119, G.120, I.121, I.141, I.168, C.169, Y.183, K.187, P.213, I.216, T.218
- Ligands: CA.7, GCO.9
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:I.46, C:P.213
- Hydrogen bonds: C:G.41, C:Y.44, C:I.46, C:D.91, C:V.92, C:N.118, C:G.120, C:G.120, C:Y.183, C:K.187, C:I.216
- Water bridges: C:S.43, C:G.47, C:N.118, C:I.121, C:I.216
NAP.11: 26 residues within 4Å:- Chain D: G.41, S.43, Y.44, G.45, I.46, N.64, D.65, I.66, L.70, C.90, D.91, V.92, N.118, A.119, G.120, I.121, I.141, I.168, C.169, Y.183, K.187, P.213, I.216, T.218
- Ligands: CA.10, GCO.12
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:I.46, D:P.213
- Hydrogen bonds: D:G.41, D:Y.44, D:I.46, D:D.91, D:V.92, D:N.118, D:G.120, D:G.120, D:Y.183, D:K.187, D:I.216
- Water bridges: D:S.43, D:G.47, D:N.118, D:I.121, D:I.216
- 4 x GCO: D-gluconic acid(Non-covalent)
GCO.3: 9 residues within 4Å:- Chain A: I.122, R.124, S.170, M.172, R.177, V.180, Y.183
- Ligands: CA.1, NAP.2
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.177, A:Y.183
- Water bridges: A:R.124
- Salt bridges: A:R.124, A:R.177
GCO.6: 9 residues within 4Å:- Chain B: I.122, R.124, S.170, M.172, R.177, V.180, Y.183
- Ligands: CA.4, NAP.5
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.177, B:Y.183
- Water bridges: B:R.124
- Salt bridges: B:R.124, B:R.177
GCO.9: 9 residues within 4Å:- Chain C: I.122, R.124, S.170, M.172, R.177, V.180, Y.183
- Ligands: CA.7, NAP.8
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.177
- Water bridges: C:R.124
- Salt bridges: C:R.124, C:R.177
GCO.12: 9 residues within 4Å:- Chain D: I.122, R.124, S.170, M.172, R.177, V.180, Y.183
- Ligands: CA.10, NAP.11
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:R.177
- Water bridges: D:R.124
- Salt bridges: D:R.124, D:R.177
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Q. et al., Structural Insight Into the Catalytic Mechanism of Gluconate 5-Dehydrogenase from Streptococcus Suis: Crystal Structures of the Substrate-Free and Quaternary Complex Enzymes. Protein Sci. (2009)
- Release Date
- 2010-12-15
- Peptides
- Dehydrogenase with different specificities: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x GCO: D-gluconic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Q. et al., Structural Insight Into the Catalytic Mechanism of Gluconate 5-Dehydrogenase from Streptococcus Suis: Crystal Structures of the Substrate-Free and Quaternary Complex Enzymes. Protein Sci. (2009)
- Release Date
- 2010-12-15
- Peptides
- Dehydrogenase with different specificities: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A