- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.3: 19 residues within 4Å:- Chain A: N.90, S.91, A.133, C.134, G.160, G.161, G.162, A.210, N.320, P.321, C.322, E.324, A.489, P.490, T.491, G.492, S.493, I.494
- Ligands: B12.4
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:S.91, A:S.91, A:S.91, A:G.161, A:N.320, A:C.322, A:E.324, A:T.491, A:G.492, A:S.493, A:S.493, A:I.494
- Water bridges: A:G.161
GDP.8: 18 residues within 4Å:- Chain B: S.91, A.133, C.134, G.161, G.162, R.206, A.210, N.320, P.321, C.322, E.324, A.489, P.490, T.491, G.492, S.493, I.494
- Ligands: B12.9
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:S.91, B:S.91, B:S.91, B:G.161, B:N.320, B:C.322, B:E.324, B:T.491, B:G.492, B:S.493, B:I.494
- 2 x B12: COBALAMIN(Non-covalent)
B12.4: 14 residues within 4Å:- Chain A: R.208, G.294, C.322, P.490, G.492, N.496, F.508, T.598, N.600, T.626, Y.628, D.630
- Ligands: GDP.3, 5AD.5
15 PLIP interactions:14 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:R.208, A:P.490, A:F.508, A:F.508, A:Y.628, A:Y.628, A:Y.628
- Hydrogen bonds: A:R.208, A:G.294, A:T.598, A:N.600, A:N.600, A:D.630
- Water bridges: A:G.631
- Metal complexes: B12.4
B12.9: 20 residues within 4Å:- Chain B: I.22, R.26, R.206, R.208, N.242, G.294, D.295, C.322, P.490, G.492, S.493, N.496, F.508, T.598, N.600, T.626, Y.628, L.633
- Ligands: GDP.8, 5AD.10
19 PLIP interactions:18 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:I.22, B:P.490, B:F.508, B:F.508, B:Y.628, B:L.633
- Hydrogen bonds: B:R.208, B:D.295, B:N.600, B:N.600
- Water bridges: B:R.206, B:N.239, B:F.241, B:F.508, B:Y.628, B:D.630, B:D.630
- Salt bridges: B:R.206
- Metal complexes: B12.9
- 2 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
5AD.5: 12 residues within 4Å:- Chain A: M.212, N.242, L.243, S.244, D.295, P.321, C.322, P.490, S.596, T.598, T.626
- Ligands: B12.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.244, A:S.244, A:C.322, A:S.596, A:T.626
5AD.10: 11 residues within 4Å:- Chain B: M.212, N.242, L.243, S.244, C.322, G.323, P.490, S.596, T.598, T.626
- Ligands: B12.9
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.244, B:S.244, B:G.297, B:C.322, B:S.596
- Water bridges: B:L.243
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Larsson, K.M. et al., Structural Basis for Adenosylcobalamin Activation in AdoCbl-Dependent Ribonucleotide Reductases. Acs Chem.Biol. (2010)
- Release Date
- 2010-07-28
- Peptides
- Ribonucleoside-diphosphate reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x B12: COBALAMIN(Non-covalent)
- 2 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Larsson, K.M. et al., Structural Basis for Adenosylcobalamin Activation in AdoCbl-Dependent Ribonucleotide Reductases. Acs Chem.Biol. (2010)
- Release Date
- 2010-07-28
- Peptides
- Ribonucleoside-diphosphate reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B