- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.3: 21 residues within 4Å:- Chain A: N.90, S.91, A.133, G.160, G.161, G.162, R.207, R.208, G.209, A.210, N.320, P.321, C.322, E.324, L.335, A.489, P.490, T.491, G.492, S.493, I.494
22 PLIP interactions:22 interactions with chain A- Hydrogen bonds: A:S.91, A:S.91, A:G.161, A:R.208, A:A.210, A:N.320, A:C.322, A:E.324, A:T.491, A:G.492, A:S.493, A:I.494
- Water bridges: A:G.160, A:R.207, A:R.207, A:R.207, A:R.207, A:R.207, A:R.207
- Salt bridges: A:R.207
- pi-Cation interactions: A:R.207, A:R.207
GDP.8: 20 residues within 4Å:- Chain B: N.90, S.91, A.133, G.161, G.162, R.207, R.208, G.209, A.210, N.320, P.321, C.322, E.324, L.335, A.489, P.490, T.491, G.492, S.493, I.494
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:S.91, B:S.91, B:G.161, B:R.207, B:R.208, B:A.210, B:N.320, B:C.322, B:E.324, B:T.491, B:G.492, B:S.493, B:I.494
- Water bridges: B:R.207, B:R.207, B:R.207, B:R.207, B:R.208
- Salt bridges: B:R.207
- pi-Cation interactions: B:R.207, B:R.207
- 2 x ADN: ADENOSINE(Non-covalent)
ADN.4: 11 residues within 4Å:- Chain A: M.212, N.242, L.243, S.244, D.295, G.297, C.322, S.596, K.597, T.598, T.626
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:N.242, A:S.244, A:S.244, A:D.295, A:G.297, A:C.322, A:K.597, A:T.626
- Water bridges: A:L.298
ADN.9: 13 residues within 4Å:- Chain B: M.212, N.242, L.243, S.244, D.295, G.297, C.322, G.323, P.490, S.596, K.597, T.598, T.626
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:L.243, B:L.243, B:D.295, B:G.297, B:K.597, B:T.598, B:T.598
- Water bridges: B:N.242, B:N.242, B:S.244, B:S.244
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Larsson, K.M. et al., Structural Basis for Adenosylcobalamin Activation in AdoCbl-Dependent Ribonucleotide Reductases. Acs Chem.Biol. (2010)
- Release Date
- 2010-07-28
- Peptides
- Ribonucleoside-diphosphate reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x ADN: ADENOSINE(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Larsson, K.M. et al., Structural Basis for Adenosylcobalamin Activation in AdoCbl-Dependent Ribonucleotide Reductases. Acs Chem.Biol. (2010)
- Release Date
- 2010-07-28
- Peptides
- Ribonucleoside-diphosphate reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B