SMTL ID : 3o15.1

Crystal Structure of Bacillus subtilis Thiamin Phosphate Synthase Complexed with a Carboxylated Thiazole Phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x 3NM: 4-methyl-5-[2-(phosphonooxy)ethyl]-1,3-thiazole-2-carboxylic acid(Non-covalent)

3NM.1: 16 residues within 4Å: Chain A: R.59, H.132, G.151, P.152, T.156, T.158, K.159, T.162, I.186, G.187, G.188, M.207, I.208, S.209 Ligands: IFP.2, POP.3 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:K.159, A:I.186, A:I.208 Hydrogen bonds: A:T.158, A:T.158, A:G.188, A:I.208, A:S.209 Water bridges: A:S.130, A:G.151, A:E.157, A:E.157, A:G.187, A:I.189, A:I.189, A:I.189 Salt bridges: A:H.132, A:K.159

1 x IFP: 2-TRIFLUOROMETHYL-5-METHYLENE-5H-PYRIMIDIN-4-YLIDENEAMINE(Non-covalent)

IFP.2: 14 residues within 4Å: Chain A: Y.29, I.31, Q.57, N.92, H.107, S.130, Y.147, G.149, K.159, V.184, I.186, S.206 Ligands: 3NM.1, POP.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.57, A:Q.57 pi-Stacking: A:H.107

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 11 residues within 4Å: Chain A: R.59, K.61, N.92, D.93, H.107, G.109, D.112, S.130, K.159 Ligands: 3NM.1, IFP.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.92, A:D.93, A:D.112, A:S.130, A:S.130 Water bridges: A:Q.110, A:D.112, A:D.112 Salt bridges: A:R.59, A:K.61, A:K.61, A:K.159, A:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCulloch, K.M. et al., Crystal Structure and Kinetic Characterization of Bacillus subtilis Thiamin Phosphate Synthase with a Carboxylated Thiazole Phosphate. to be published

Release Date

2011-07-27

Peptides

Thiamine-phosphate pyrophosphorylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thiamine-phosphate pyrophosphorylase