SMTL ID : 3o2x.4 (6 other biounits)

MMP-13 in complex with selective tetrazole core inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 3O2: N-hydroxy-1-(2-methoxyethyl)-4-{[4-(3-{5-[4-(trifluoromethoxy)phenyl]-2H-tetrazol-2-yl}propoxy)phenyl]sulfonyl}piperidine-4-carboxamide(Non-covalent)

3O2.1: 22 residues within 4Å: Chain A: G.80, L.81, L.82, A.83, L.115, H.119, E.120, H.123, H.129, A.135, L.136, F.138, P.139, I.140, Y.141, T.142, Y.143, G.145, F.149, M.150, P.152 Ligands: ZN.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.81, A:F.149, A:F.149, A:P.152 Hydrogen bonds: A:A.83, A:T.142, A:M.150 Water bridges: A:T.142 pi-Stacking: A:H.119

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.3: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: 3O2.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: A.58, D.59, N.91, Y.92, G.93, D.95 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.91, A:D.95, H2O.1 CA.5: 6 residues within 4Å: Chain A: D.76, G.77, S.79, L.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:S.79, A:L.81, A:D.99, A:E.102

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: Y.17, K.36, R.52 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.17 Water bridges: A:Y.17, A:K.36 Salt bridges: A:R.52 SO4.7: 3 residues within 4Å: Chain A: K.12, M.13, N.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.13, A:N.14, A:N.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barta, T.E. et al., MMP-13 in complex with selective tetrazole core inhibitor. To be Published

Release Date

2011-08-10

Peptides

Collagenase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Collagenase 3

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