- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3O2: N-hydroxy-1-(2-methoxyethyl)-4-{[4-(3-{5-[4-(trifluoromethoxy)phenyl]-2H-tetrazol-2-yl}propoxy)phenyl]sulfonyl}piperidine-4-carboxamide(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
ZN.2: 4 residues within 4Å:- Chain A: H.69, D.71, H.84, H.97
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97
ZN.3: 5 residues within 4Å:- Chain A: H.119, E.120, H.123, H.129
- Ligands: 3O2.1
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.119, A:H.123, A:H.129
ZN.11: 4 residues within 4Å:- Chain B: H.69, D.71, H.84, H.97
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.69, B:D.71, B:H.84, B:H.97
ZN.12: 4 residues within 4Å:- Chain B: H.119, H.123, H.129
- Ligands: 3O2.10
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.119, B:H.123, B:H.129
ZN.18: 4 residues within 4Å:- Chain C: H.69, D.71, H.84, H.97
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.69, C:D.71, C:H.84, C:H.97
ZN.19: 4 residues within 4Å:- Chain C: H.119, H.123, H.129
- Ligands: 3O2.17
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:H.119, C:H.123, C:H.129
ZN.27: 4 residues within 4Å:- Chain D: H.69, D.71, H.84, H.97
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:H.69, D:D.71, D:H.84, D:H.97
ZN.28: 4 residues within 4Å:- Chain D: H.119, H.123, H.129
- Ligands: 3O2.26
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:H.119, D:H.123, D:H.129
- 8 x CA: CALCIUM ION(Non-covalent)
CA.4: 5 residues within 4Å:- Chain A: D.59, N.91, Y.92, G.93, D.95
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:N.91, A:G.93, A:D.95, H2O.3
CA.5: 6 residues within 4Å:- Chain A: D.76, G.77, S.79, L.81, D.99, E.102
6 PLIP interactions:6 interactions with chain A- Metal complexes: A:D.76, A:G.77, A:S.79, A:L.81, A:D.99, A:E.102
CA.13: 6 residues within 4Å:- Chain B: A.58, D.59, N.91, Y.92, G.93, D.95
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:N.91, B:D.95, H2O.7
CA.14: 6 residues within 4Å:- Chain B: D.76, G.77, S.79, L.81, D.99, E.102
6 PLIP interactions:6 interactions with chain B- Metal complexes: B:D.76, B:G.77, B:S.79, B:L.81, B:D.99, B:E.102
CA.20: 5 residues within 4Å:- Chain C: A.58, D.59, N.91, G.93, D.95
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:N.91, C:D.95, H2O.17
CA.21: 6 residues within 4Å:- Chain C: D.76, G.77, S.79, L.81, D.99, E.102
6 PLIP interactions:6 interactions with chain C- Metal complexes: C:D.76, C:G.77, C:S.79, C:L.81, C:D.99, C:E.102
CA.29: 6 residues within 4Å:- Chain D: A.58, D.59, N.91, Y.92, G.93, D.95
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:N.91, D:D.95, H2O.22
CA.30: 7 residues within 4Å:- Chain D: D.76, G.77, P.78, S.79, L.81, D.99, E.102
6 PLIP interactions:6 interactions with chain D- Metal complexes: D:D.76, D:G.77, D:S.79, D:L.81, D:D.99, D:E.102
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 4 residues within 4Å:- Chain A: T.27, H.28
- Chain B: T.27, H.28
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:H.28, A:H.28
- Water bridges: B:S.29, A:S.29
- Salt bridges: B:H.28, A:H.28
SO4.7: 5 residues within 4Å:- Chain A: Y.17, E.32, K.33, K.36, R.52
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.17
- Water bridges: A:K.36
- Salt bridges: A:K.33, A:R.52
SO4.8: 3 residues within 4Å:- Chain A: K.12, M.13, N.14
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:M.13, A:N.14, A:N.14
SO4.15: 3 residues within 4Å:- Chain B: Y.17, K.36, R.52
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.17
- Water bridges: B:Y.17, B:K.36
- Salt bridges: B:R.52
SO4.16: 3 residues within 4Å:- Chain B: K.12, M.13, N.14
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:M.13, B:N.14, B:N.14
SO4.22: 4 residues within 4Å:- Chain C: Y.17, E.32, K.36, R.52
3 PLIP interactions:3 interactions with chain C- Water bridges: C:Y.17, C:Y.17
- Salt bridges: C:R.52
SO4.23: 3 residues within 4Å:- Chain C: K.12, M.13, N.14
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:M.13, C:N.14, C:N.14
SO4.24: 4 residues within 4Å:- Chain C: T.27, H.28
- Chain D: T.27, H.28
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:H.28, C:H.28
- Water bridges: D:H.28, D:S.29, C:S.29
- Salt bridges: D:H.28, C:H.28
SO4.31: 5 residues within 4Å:- Chain D: Y.17, E.32, K.33, K.36, R.52
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:Y.17, D:Y.17
- Water bridges: D:K.36
- Salt bridges: D:K.33, D:R.52
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.9: 7 residues within 4Å:- Chain A: Y.73, L.81, H.84, A.85, F.86
- Chain D: N.91
- Ligands: 3O2.1
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.84
EPE.25: 7 residues within 4Å:- Chain B: N.91
- Chain C: Y.73, L.81, H.84, A.85, F.86
- Ligands: 3O2.17
2 PLIP interactions:2 interactions with chain C- Salt bridges: C:H.84
- pi-Cation interactions: C:Y.73
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barta, T.E. et al., MMP-13 in complex with selective tetrazole core inhibitor. To be Published
- Release Date
- 2011-08-10
- Peptides
- Collagenase 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
AD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x 3O2: N-hydroxy-1-(2-methoxyethyl)-4-{[4-(3-{5-[4-(trifluoromethoxy)phenyl]-2H-tetrazol-2-yl}propoxy)phenyl]sulfonyl}piperidine-4-carboxamide(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Barta, T.E. et al., MMP-13 in complex with selective tetrazole core inhibitor. To be Published
- Release Date
- 2011-08-10
- Peptides
- Collagenase 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
AD
C