SMTL ID : 3o3h.1

T. maritima RNase H2 D107N in complex with nucleic acid substrate and manganese ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 2 residues within 4Å: Chain A: D.123 Chain C: C.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.123, A:D.123, H2O.1 MN.2: 6 residues within 4Å: Chain A: D.17, D.44, D.123, S.133 Chain C: C.6, T.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.17, H2O.2 MN.3: 1 residues within 4Å: Chain B: G.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rychlik, M.P. et al., Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage. Mol.Cell (2010)

Release Date

2010-12-08

Peptides

Ribonuclease HII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease HII

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