SMTL ID : 3o5c.2 (1 other biounit)

Cytochrome c Peroxidase BccP of Shewanella oneidensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: I.45, S.46, C.47, C.50, H.51, S.64, I.65, G.66, I.74, S.76, P.77, V.79, Q.88, F.89, W.90, R.93, L.97, Q.100, A.101, P.104, E.110, M.111, I.150, E.154, K.237 21 PLIP interactions: 20 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.45, A:I.74, A:P.77, A:V.79, A:L.97, A:Q.100, A:P.104, A:E.110, A:I.150 Hydrogen bonds: A:Q.88, A:F.89, A:W.90 Water bridges: A:D.91, A:R.93, A:R.93, A:K.237, A:K.237 Salt bridges: A:R.93, A:K.237 Metal complexes: A:H.51, H2O.6 HEM.2: 22 residues within 4Å: Chain A: W.90, G.190, C.191, C.194, H.195, M.206, M.208, L.210, F.236, P.239, L.241, I.244, Y.250, F.251, H.252, L.259, A.262, V.263, M.266, A.267, Q.270, L.271 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:W.90, A:M.206, A:M.208, A:L.210, A:L.241, A:L.241, A:I.244, A:I.244, A:L.259, A:A.262, A:V.263, A:M.266, A:A.267, A:Q.270, A:Q.270, A:L.271, A:L.271 Hydrogen bonds: A:F.251, A:H.252 Salt bridges: A:H.252 Metal complexes: A:H.195 HEM.5: 25 residues within 4Å: Chain B: I.45, S.46, C.47, C.50, H.51, S.64, I.65, G.66, I.74, S.76, P.77, V.79, M.85, Q.88, F.89, W.90, R.93, L.97, Q.100, P.104, E.110, M.111, I.150, E.154, K.237 20 PLIP interactions: 19 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: B:I.45, B:I.74, B:P.77, B:V.79, B:L.97, B:Q.100, B:P.104, B:P.104, B:E.110, B:E.110, B:I.150 Hydrogen bonds: B:F.89, B:W.90 Water bridges: B:D.91, B:R.93, B:K.237 Salt bridges: B:R.93, B:K.237 Metal complexes: B:H.51, H2O.18 HEM.6: 23 residues within 4Å: Chain B: W.90, G.190, C.191, C.194, H.195, M.206, M.208, L.210, F.236, P.239, L.241, I.244, Y.250, F.251, H.252, L.259, A.262, V.263, M.266, A.267, Q.270, L.271, M.283 24 PLIP interactions: 24 interactions with chain B, Hydrophobic interactions: B:W.90, B:M.206, B:M.208, B:L.210, B:P.239, B:P.239, B:L.241, B:L.241, B:I.244, B:F.251, B:L.259, B:A.262, B:V.263, B:M.266, B:A.267, B:Q.270, B:Q.270, B:L.271, B:L.271 Hydrogen bonds: B:F.251, B:H.252 Water bridges: B:T.247 Salt bridges: B:H.252 Metal complexes: B:H.195

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: N.75, T.247, P.249 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.247, A:P.249, H2O.1, H2O.1, H2O.1 CA.7: 3 residues within 4Å: Chain B: N.75, T.247, P.249 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:P.249, H2O.14, H2O.14, H2O.15, H2O.17

1 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.4: 7 residues within 4Å: Chain A: E.28, K.31, M.32, R.131, S.298, P.300, I.301 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:E.28 Hydrogen bonds: A:K.31, A:S.298, A:I.301 Water bridges: B:Q.296, B:Q.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schutz, B. et al., Investigation of the Electron Transport Chain to and the Catalytic Activity of the Diheme Cytochrome c Peroxidase CcpA of Shewanella oneidensis. Appl.Environ.Microbiol. (2011)

Release Date

2011-08-03

Peptides

Cytochrome c551 peroxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cytochrome c551 peroxidase

Related Entries With Identical Sequence