SMTL ID : 3o9c.1

Crystal Structure of wild-type HIV-1 Protease in complex with kd20

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

1 x K20: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-3-{(1,3-benzodioxol-5-ylsulfonyl)[(2S)-2-methylbutyl]amino}-1-benzyl-2-hydroxypropyl]carbamate(Non-covalent)

K20.1: 24 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, V.82 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 21 PLIP interactions: 13 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:V.32, B:P.81, B:V.82, B:I.84, A:V.82 Hydrogen bonds: B:R.8, B:D.29, B:D.30, A:D.25, A:G.27, A:G.27, A:D.29, A:D.30 Water bridges: B:G.48, B:G.48, B:I.50, A:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nalam, M.N. et al., Substrate envelope-designed potent HIV-1 protease inhibitors to avoid drug resistance. Chem.Biol. (2013)

Release Date

2011-08-10

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol polyprotein

Related Entries With Identical Sequence