- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x DIH: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 10 residues within 4Å:- Chain A: P.20, G.21, R.25, R.88, V.89, G.90, S.91, E.182
- Chain F: R.44
- Ligands: DIH.1
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: A:G.21, A:S.91, A:E.182
- Water bridges: A:S.91
- Salt bridges: A:R.25, A:R.88, F:R.44
PO4.4: 10 residues within 4Å:- Chain B: P.20, G.21, R.25, R.88, V.89, G.90, S.91, E.182
- Chain C: R.44
- Ligands: DIH.3
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:G.21, B:S.91, B:E.182
- Salt bridges: B:R.25, B:R.88, C:R.44
PO4.6: 10 residues within 4Å:- Chain B: R.44
- Chain C: P.20, G.21, R.25, R.88, V.89, G.90, S.91, E.182
- Ligands: DIH.5
7 PLIP interactions:1 interactions with chain B, 6 interactions with chain C- Salt bridges: B:R.44, C:R.25, C:R.88
- Hydrogen bonds: C:G.21, C:S.91, C:S.91
- Water bridges: C:S.91
PO4.8: 9 residues within 4Å:- Chain D: P.20, G.21, R.25, R.88, G.90, S.91, E.182
- Chain E: R.44
- Ligands: DIH.7
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:G.21, D:S.91, D:S.91
- Water bridges: D:S.204
- Salt bridges: D:R.25, D:R.88, E:R.44
PO4.10: 10 residues within 4Å:- Chain D: R.44
- Chain E: P.20, G.21, R.25, R.88, V.89, G.90, S.91, E.182
- Ligands: DIH.9
8 PLIP interactions:7 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:G.21, E:S.91, E:S.91, E:S.91
- Water bridges: E:S.91
- Salt bridges: E:R.25, E:R.88, D:R.44
PO4.12: 8 residues within 4Å:- Chain A: R.44
- Chain F: P.20, G.21, R.25, R.88, G.90, S.91
- Ligands: DIH.11
8 PLIP interactions:7 interactions with chain F, 1 interactions with chain A- Hydrogen bonds: F:G.21, F:V.89, F:S.91, F:S.91
- Water bridges: F:S.204
- Salt bridges: F:R.25, F:R.88, A:R.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, J. et al., crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis. To be Published
- Release Date
- 2010-11-10
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x DIH: 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, J. et al., crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis. To be Published
- Release Date
- 2010-11-10
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F