SMTL ID : 3odh.2 (1 other biounit)

Structure of OkrAI/DNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.86, W.100 Chain D: G.5 Ligands: CA.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.86, A:W.100, H2O.1, H2O.7, H2O.14 CA.2: 4 residues within 4Å: Chain B: D.86, E.99 Chain C: G.4, G.5 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.86, B:E.99, H2O.12, H2O.12, H2O.12 CA.3: 5 residues within 4Å: Chain A: E.71, D.86 Chain D: G.4, G.5 Ligands: CA.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.86, H2O.1, H2O.7, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanamee, E.S. et al., Asymmetric DNA recognition by the OkrAI endonuclease, an isoschizomer of BamHI. Nucleic Acids Res. (2011)

Release Date

2010-10-06

Peptides

OkrAI endonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

OkrAI endonuclease

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