SMTL ID : 3odm.5 (5 other biounits)

Archaeal-type phosphoenolpyruvate carboxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

9 x AUC: GOLD (I) CYANIDE ION(Non-covalent)

AUC.1: 2 residues within 4Å: Chain A: M.167 Chain B: M.167 No protein-ligand interaction detected (PLIP) AUC.2: 4 residues within 4Å: Chain A: K.25, C.28, E.66, K.313 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.28 AUC.3: 6 residues within 4Å: Chain A: T.32, Q.33, H.34, M.69, D.71, R.367 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.33, A:R.367 AUC.4: 5 residues within 4Å: Chain A: K.53, G.61, G.62, L.63, E.302 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.302 AUC.5: 2 residues within 4Å: Chain A: E.274, H.307 No protein-ligand interaction detected (PLIP) AUC.7: 8 residues within 4Å: Chain B: T.32, Q.33, H.34, M.69, D.71, R.105, R.367, R.413 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.33 AUC.8: 2 residues within 4Å: Chain B: C.28, K.313 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.28 AUC.9: 5 residues within 4Å: Chain B: K.53, G.61, G.62, L.63, E.302 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.302 AUC.10: 2 residues within 4Å: Chain B: E.274, H.307 No protein-ligand interaction detected (PLIP)

2 x MLI: MALONATE ION(Non-functional Binders)

MLI.6: 8 residues within 4Å: Chain A: H.34, R.105, M.220, A.222, R.223, S.224, D.225, G.262 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.222 Hydrogen bonds: A:R.223, A:S.224, A:D.225 Salt bridges: A:H.34, A:R.105 MLI.11: 8 residues within 4Å: Chain B: H.34, R.105, L.186, A.222, R.223, S.224, D.225, G.262 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.222 Hydrogen bonds: B:R.223, B:S.224, B:D.225, B:D.225 Salt bridges: B:H.34, B:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dharmarajan, L. et al., Structure of an archaeal-type phosphoenolpyruvate carboxylase sensitive to inhibition by aspartate. Proteins (2011)

Release Date

2011-02-02

Peptides

Phosphoenolpyruvate carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Phosphoenolpyruvate carboxylase

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