SMTL ID : 3ogb.1

Sperm whale myoglobin mutant H64W deoxy-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, W.65, T.68, V.69, A.72, L.73, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 24 PLIP interactions: 24 interactions with chain A, Hydrophobic interactions: A:T.40, A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:A.72, A:L.90, A:I.100, A:I.100, A:Y.104, A:L.105, A:I.108, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:R.46, A:P.89, A:S.93 Salt bridges: A:R.46, A:H.94, A:H.98 pi-Stacking: A:H.98 Metal complexes: A:H.94

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: K.17, R.119, H.120, P.121, G.122, N.123 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.119, A:G.122, A:N.123, A:N.123 Water bridges: A:H.120 Salt bridges: A:K.17, A:H.120 SO4.3: 3 residues within 4Å: Chain A: A.144, K.148, Q.153 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.153, A:G.154 Water bridges: A:K.148, A:K.148, A:G.154 Salt bridges: A:K.148 SO4.4: 7 residues within 4Å: Chain A: L.10, N.123, F.124, G.125, A.126, D.127, A.128 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.125, A:D.127, A:A.128 Water bridges: A:A.126, A:D.127 SO4.5: 4 residues within 4Å: Chain A: R.32, H.114, S.118 Ligands: SO4.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.32, A:S.118, A:S.118 Water bridges: A:K.35 Salt bridges: A:H.114 SO4.6: 3 residues within 4Å: Chain A: Q.129, G.130, N.133 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.129, A:Q.129, A:N.133 Water bridges: A:G.130, A:G.130 SO4.7: 3 residues within 4Å: Chain A: I.113, H.114, H.117 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.32, A:H.114, A:H.114 Salt bridges: A:H.114 SO4.8: 3 residues within 4Å: Chain A: R.32, H.114 Ligands: SO4.5 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.32, A:H.114 SO4.9: 3 residues within 4Å: Chain A: M.1, E.137, K.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.1 Water bridges: A:K.141, A:K.141 Salt bridges: A:K.141 SO4.10: 3 residues within 4Å: Chain A: H.82, H.83, E.84 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.84 Water bridges: A:G.81, A:H.82, A:A.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birukou, I. et al., Blocking the gate to ligand entry in human hemoglobin. J.Biol.Chem. (2011)

Release Date

2010-09-08

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

Related Entries With Identical Sequence