SMTL ID : 3oh1.1

Protein structure of USP from L. major bound to URIDINE-5'-DIPHOSPHATE-Galacturonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x UGB: (2S,3R,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid(Non-covalent)

UGB.1: 19 residues within 4Å: Chain A: V.120, A.121, G.122, G.123, M.168, Q.196, P.221, G.223, H.224, Q.270, D.271, I.307, N.325, S.358, V.359, N.360, Q.407, Y.430, K.434 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.122, A:G.123, A:Q.196, A:Q.196, A:G.223, A:H.224, A:Q.270, A:D.271, A:D.271, A:N.325, A:N.325, A:S.358, A:N.360, A:Q.407 Water bridges: A:D.271, A:S.358, A:Y.430, A:K.434, A:K.434 Salt bridges: A:K.434, A:K.434, A:K.434, A:K.434

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Q.156, R.157, G.160, K.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.157 Water bridges: A:Q.156 GOL.3: 3 residues within 4Å: Chain A: S.478, S.479, Q.480 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.479, A:S.479, A:Q.480

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dickmanns, A. et al., Structural basis for the broad substrate range of the UDP-sugar pyrophosphorylase from Leishmania major. J.Mol.Biol. (2011)

Release Date

2010-11-17

Peptides

UDP-sugar pyrophosphorylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-sugar pyrophosphorylase

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