SMTL ID : 3ohr.1

Crystal structure of fructokinase from bacillus subtilis complexed with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: G.133, T.134, G.185, P.186, A.196, A.197, G.233, G.234, V.235, Q.237, Q.238 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.134, A:T.134, A:G.234 Water bridges: A:T.134, A:G.135, A:G.185, A:E.189, A:E.189, A:A.196, A:A.197, A:Q.238 ADP.4: 11 residues within 4Å: Chain B: G.133, T.134, G.185, P.186, A.196, A.197, G.233, G.234, V.235, Q.237, Q.238 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.134, B:T.134, B:G.234 Water bridges: B:T.14, B:T.134, B:G.135, B:G.185, B:E.189, B:A.196, B:A.197, B:Q.238

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.157, C.172, H.175, C.178 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.157, A:C.172, A:H.175, A:C.178 ZN.5: 4 residues within 4Å: Chain B: H.157, C.172, H.175, C.178 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.157, B:C.172, B:H.175, B:C.178

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.82, A.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.83 Water bridges: A:P.81, A:A.83 SO4.6: 2 residues within 4Å: Chain B: K.82, A.83 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.83 Water bridges: B:P.81, B:A.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Structural studies of ROK fructokinase YdhR from Bacillus subtilis: insights into substrate binding and fructose specificity. J.Mol.Biol. (2011)

Release Date

2010-09-15

Peptides

Putative fructokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative fructokinase