SMTL ID : 3oj6.1

Crystal structure of Blasticidin S Deaminase from Coccidioides Immitis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.78, E.80, C.112, C.115 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.78, A:C.112, A:C.115 ZN.3: 5 residues within 4Å: Chain B: C.78, E.80, C.112, C.115 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.78, B:C.112, B:C.115 ZN.5: 5 residues within 4Å: Chain C: C.78, E.80, C.112, C.115 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.78, C:C.112, C:C.115 ZN.8: 5 residues within 4Å: Chain D: C.78, E.80, C.112, C.115 Ligands: EDO.9 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.78, D:C.112, D:C.115

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: V.53, C.78, E.80, A.100, S.110, P.111, C.112, C.115 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.112 Water bridges: A:A.79 EDO.4: 10 residues within 4Å: Chain B: V.53, C.78, E.80, A.100, L.109, S.110, P.111, C.112, C.115 Ligands: ZN.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:C.112 Water bridges: B:A.79 EDO.7: 9 residues within 4Å: Chain C: V.53, C.78, E.80, A.100, S.110, P.111, C.112, C.115 Ligands: ZN.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:C.112 EDO.9: 9 residues within 4Å: Chain D: V.53, C.78, E.80, A.100, S.110, P.111, C.112, C.115 Ligands: ZN.8 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:C.112 Water bridges: D:A.79 EDO.10: 4 residues within 4Å: Chain D: V.64, F.65, S.66, V.86 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.66, D:S.66 Water bridges: D:S.66

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 12 residues within 4Å: Chain A: N.74, G.75, R.114 Chain B: N.74, G.75, R.114 Chain C: N.74, G.75, R.114 Chain D: N.74, G.75, R.114 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

SSGCID et al., Crystal structure of Blasticidin S Deaminase from Coccidioides Immitis. To be Published

Release Date

2010-09-15

Peptides

Blasticidin-S deaminase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Blasticidin-S deaminase