SMTL ID : 3oke.1

Crystal structure of S25-39 in complex with Ko

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KO2: prop-2-en-1-yl D-glycero-alpha-D-talo-oct-2-ulopyranosidonic acid(Non-covalent)

KO2.1: 9 residues within 4Å: Chain A: Y.38, S.97, Y.98, R.101 Chain B: Y.33, F.50, R.52, H.102, E.107 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.98, A:Y.98, A:R.101, A:R.101, B:Y.33, B:E.107 Salt bridges: B:R.52, B:K.56

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain B: R.52, E.61 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blackler, R.J. et al., A Common NH53K Mutation in the Combining Site of Antibodies Raised against Chlamydial LPS Glycoconjugates Significantly Increases Avidity. Biochemistry (2011)

Release Date

2011-04-06

Peptides

S25-39 Fab (IgG1k) light chain: A
S25-39 Fab (IgG1k) heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S25-39 Fab (IgG1k) light chain

S25-39 Fab (IgG1k) heavy chain

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