SMTL ID : 3omg.2 (1 other biounit)

Structure of human SND1 extended tudor domain in complex with the symmetrically dimethylated arginine PIWIL1 peptide R14me2s

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ARG- ALA- 2MR- GLY- GLN: dimethylated arginine peptide R14me2s(Non-covalent)

ARG-ALA-2MR-GLY-GLN.1: 11 residues within 4Å: Chain A: F.37, T.39, F.91, V.92, D.93, Y.97, Y.114, Y.117, N.119, N.174, Q.176 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.37, A:N.174 Hydrogen bonds: A:N.119, A:N.174, A:Q.176, A:Q.176 Water bridges: A:Q.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Structural basis for recognition of arginine methylated Piwi proteins by the extended Tudor domain. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-09-08

Peptides

Staphylococcal nuclease domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Staphylococcal nuclease domain-containing protein 1

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