SMTL ID : 3onq.1 (2 other biounits)

Crystal Structure of Regulator of Polyketide Synthase Expression BAD_0249 from Bifidobacterium adolescentis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

23 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.210, S.211, L.212, E.213 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: P.197, Y.228, R.229, R.232 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: R.130, S.131, G.135 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: R.190, P.194, Y.199, R.258 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: G.173, R.178 Chain B: L.172, G.173 Ligands: GOL.19 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: S.66, L.67 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: T.106, P.107, E.108, V.109 Ligand excluded by PLIP SO4.10: 1 residues within 4Å: Chain A: R.130 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: T.106, P.107, E.108, V.109 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: R.130, S.131, G.135 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain B: R.141 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: S.210, S.211, L.212, E.213 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: R.190, Y.199, R.258 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain C: R.130, N.184 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain C: R.130, S.131, G.135 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain B: R.26 Chain C: L.48, G.49, E.84, H.85 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain C: R.190, Y.199, R.258 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: P.197, R.229, R.232 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain D: R.130, S.131, G.135 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain D: T.106, P.107, E.108, V.109 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain D: R.190, Y.199, R.258, R.262 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain C: L.172, G.173 Chain D: R.178 Ligands: GOL.27 Ligand excluded by PLIP SO4.34: 2 residues within 4Å: Chain D: S.66, L.67 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: Y.91, M.144, F.145, Q.148, L.172 Ligands: GOL.19 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.91, A:Q.148 Water bridges: A:R.141 GOL.9: 5 residues within 4Å: Chain A: E.108, C.111, T.112, M.115, P.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.108, A:C.111 GOL.16: 2 residues within 4Å: Chain B: M.102, G.103 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.103 GOL.17: 3 residues within 4Å: Chain B: R.130, E.180, N.184 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.130, B:R.130, B:N.184 GOL.18: 4 residues within 4Å: Chain B: Y.182, R.183, Q.187, R.260 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.183, B:R.183, B:Q.187, B:R.260, B:R.260 GOL.19: 6 residues within 4Å: Chain A: L.172, G.173 Chain B: D.175, R.178 Ligands: GOL.4, SO4.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.178, B:R.178 GOL.20: 4 residues within 4Å: Chain B: D.196, P.197, R.229, R.232 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.232 GOL.26: 3 residues within 4Å: Chain C: H.222, N.224, T.225 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.224, C:T.225 GOL.27: 5 residues within 4Å: Chain C: G.173, D.175, R.178 Chain D: G.173 Ligands: SO4.33 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.178, C:R.178 Water bridges: C:G.173, C:G.173, C:D.175 GOL.28: 2 residues within 4Å: Chain C: T.34, R.141 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.141, C:R.141 GOL.29: 6 residues within 4Å: Chain C: P.244, R.245, Y.248 Chain D: L.206, K.207, T.251 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:R.245, D:K.207 GOL.35: 3 residues within 4Å: Chain D: R.130, H.138, E.180 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.130, D:R.130, D:H.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Regulator of Polyketide Synthase Expression BAD_0249 from Bifidobacterium adolescentis. To be Published

Release Date

2010-09-08

Peptides

Regulator of polyketide synthase expression: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Regulator of polyketide synthase expression

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