SMTL ID : 3oqq.1

Crystal structure of a Putative lipoprotein (BACOVA_00967) from Bacteroides ovatus at 2.08 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.146, N.148, D.149, G.186, E.397 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.146, A:D.146, A:G.186, A:E.397, A:E.397 CA.2: 4 residues within 4Å: Chain A: E.132, D.146, D.149 Ligands: CA.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.132, A:E.132, A:D.146, A:D.149, H2O.1 CA.3: 2 residues within 4Å: Chain A: D.428 Ligands: ACT.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.428, A:D.428, H2O.6 CA.4: 3 residues within 4Å: Chain A: N.114, D.117, Q.164 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.117, A:D.117, H2O.1, H2O.9

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain A: Q.289, Y.396, D.428, E.429, T.431 Ligands: CA.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.396

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 8 residues within 4Å: Chain A: V.192, T.270, D.272, K.338, E.344, T.353, A.355, Y.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.338, A:T.353 Water bridges: A:K.338 PGE.7: 8 residues within 4Å: Chain A: F.91, F.93, R.348, K.380, G.381, V.412, D.413, K.415 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.413, A:D.413, A:K.415 Water bridges: A:K.415

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative lipoprotein (BACOVA_00967) from Bacteroides ovatus at 2.08 A resolution. To be published

Release Date

2011-09-14

Peptides

Putative lipoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative lipoprotein