SMTL ID : 3ory.2 (1 other biounit)

Crystal structure of Flap endonuclease 1 from hyperthermophilic archaeon Desulfurococcus amylolyticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

9 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: M.11, D.41, Y.43, N.44, E.104, E.168, D.187, D.189 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.44, A:E.104, A:E.104, A:E.104, A:E.168, A:S.185, A:D.187 Water bridges: A:K.101, A:K.101 PO4.2: 5 residues within 4Å: Chain A: D.17, G.260, P.261, K.262, K.263 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.260, A:G.260, A:K.262, A:K.263 PO4.3: 7 residues within 4Å: Chain A: D.242, G.273, I.274, E.275, V.290, I.291, K.294 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.242, A:I.274, A:E.275 Water bridges: A:D.242, A:D.242, A:K.294, A:K.294 Salt bridges: A:K.294 PO4.4: 8 residues within 4Å: Chain B: M.11, D.41, Y.43, N.44, E.104, E.168, D.187, D.189 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.44, B:E.104, B:E.104, B:E.104, B:E.168, B:S.185, B:D.187 Water bridges: B:K.101, B:K.101 PO4.5: 5 residues within 4Å: Chain B: D.17, G.260, P.261, K.262, K.263 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.260, B:G.260, B:K.262, B:K.263 PO4.6: 7 residues within 4Å: Chain B: D.242, G.273, I.274, E.275, V.290, I.291, K.294 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.242, B:I.274, B:E.275 Water bridges: B:D.242, B:D.242, B:K.294, B:K.294 Salt bridges: B:K.294 PO4.7: 8 residues within 4Å: Chain C: M.11, D.41, Y.43, N.44, E.104, E.168, D.187, D.189 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:N.44, C:E.104, C:E.104, C:E.104, C:E.168, C:S.185, C:D.187 Water bridges: C:K.101, C:K.101 PO4.8: 5 residues within 4Å: Chain C: D.17, G.260, P.261, K.262, K.263 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.260, C:G.260, C:K.262, C:K.263 PO4.9: 7 residues within 4Å: Chain C: D.242, G.273, I.274, E.275, V.290, I.291, K.294 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.242, C:I.274, C:E.275 Water bridges: C:D.242, C:D.242, C:K.294, C:K.294 Salt bridges: C:K.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mase, T. et al., Structure of flap endonuclease 1 from the hyperthermophilic archaeon Desulfurococcus amylolyticus. Acta Crystallogr.,Sect.F (2011)

Release Date

2011-02-09

Peptides

flap endonuclease 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

flap endonuclease 1

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